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Report for Sequence Feature Glyma18g03120

Feature Type:gene_model
Chromosome:Gm18
Start:2059647
stop:2062874
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g03120
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55920AT Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:20743529-20745049 REVERSE LENGTH=228 SoyBaseE_val: 2.00E-109ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0880 KOG Peptidyl-prolyl cis-trans isomerase JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF121Panther JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_I1MZ24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1MZ24_SOYBN SoyBaseE_val: 5.00E-172ISS
UniRef100_I1MZ24UniRef Annotation by Michelle Graham. Best UniRef hit: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glycine max RepID=I1MZ24_SOYBN SoyBaseE_val: 5.00E-172ISS

Expression Patterns of Glyma18g03120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03120
ParalogEvidenceComments
Glyma11g35280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03120 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g027400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g03120
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g03120
>Glyma18g03120.1   sequence type=CDS   gene model=Glyma18g03120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTCAGAGGAACTGGAACGCTGATTTTGGTGAGTCTCTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACCGAACCAGCAACCCTTCCTCTCGCAGTAACTTCATTGCAACTCAACATGATCGCTCAGATACCCCTTTGGAACAGGATTTGGAGGGTGTCACTCACAAGGTGTATTTTGATATTCAGATCCATGGCAAAGTAGCAGGTCGCATAGTCATGGGCCTTTTTGGGAACACAGTACCAAAAACTGCAGAAAACTTTCGGGCGCTTTGTACAGGAGAGAAAGGAGTGGGAAGAAGTGGGAAGTCTCTTCATTATAAAGGGAGCACATTCCATAGGATTATGCCGAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCCGATGAAAACTTTAAGCTGAAGCATACTGGGCCAGGATACTTATCCATGGCAAATTCTGGGGAAGACACCAACGGCTCCCAGTTCTTCATAACAACAGTTAAAACCAGCTGGCTGGATGGACACCATGTCGTATTCGGCAAGGTACTTTCCGGTATGGACGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAATGGCTCGCCAAAAAACAAGGTTGTCATATTAGACAGCGGAGAATTAACTTCATGA
Predicted protein sequences of Glyma18g03120
>Glyma18g03120.1   sequence type=predicted peptide   gene model=Glyma18g03120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFRGTGTLILVSLLWLFFLCATIAFFQLHLVDNRTSNPSSRSNFIATQHDRSDTPLEQDLEGVTHKVYFDIQIHGKVAGRIVMGLFGNTVPKTAENFRALCTGEKGVGRSGKSLHYKGSTFHRIMPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGEDTNGSQFFITTVKTSWLDGHHVVFGKVLSGMDVLYKIEAEGSENGSPKNKVVILDSGELTS*






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