Glyma18g03100 - SoyBase

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Report for Sequence Feature Glyma18g03100

Feature Type:	gene_model
Chromosome:	Gm18
Start:	2041975
stop:	2047665
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g03100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40116	AT	Annotation by Michelle Graham. TAIR10: Phosphoinositide-specific phospholipase C family protein \| chr2:16751782-16754311 FORWARD LENGTH=613	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004435	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phospholipase C activity	SoyBase	N/A	ISS
GO:0004629	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity	SoyBase	N/A	ISS
GO:0008081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity	SoyBase	N/A	ISS
KOG0169	KOG	Phosphoinositide-specific phospholipase C	JGI		ISS
PTHR10336	Panther	PHOSPHOLIPASE C-RELATED	JGI		ISS
PTHR10336:SF35	Panther	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY P	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF00387	PFAM	Phosphatidylinositol-specific phospholipase C, Y domain	JGI		ISS
PF00388	PFAM	Phosphatidylinositol-specific phospholipase C, X domain	JGI		ISS
PF09279	PFAM	Phosphoinositide-specific phospholipase C, efhand-like	JGI		ISS
UniRef100_I1MZ22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZ22_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P93620	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoinositide-specific phospholipase C n=1 Tax=Vigna unguiculata RepID=P93620_VIGUN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g03100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g03100

Paralog	Evidence	Comments
Glyma11g35300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g03100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g027200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g03100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g03100

Limit To All Plant Sequences

>Glyma18g03100.2   sequence type=transcript   gene model=Glyma18g03100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGAAAGATAAATATTTTTCCATAAATGGAACTGTCCTTGGTTCGTGGCCTCATGTATGTAGCATTCATAGTCACAACACGTATACTACAATTGCATAGTGCTGCGATCGCCGTTTCTTCTCTGAAACAAACACACCGACACCAATCACTCTCTTTGATCCATTCCGTTTAGACGATTAGCTTTTACGATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGCAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGAATTATAGGATCAGCCATATAATAATCTTAGATAATGGATATGAGGTCATTGTAATGATAATTATATTTATCTTTAGCTGCTTGCAATGGTATTTCTGGCTTTACTATGTTATATTTTCTGCACCATCAACATCAATATAAAACAGTATTAAGAACTTCCAATATTGTCACATGGCCTTTTAGATTACACTGATAGCAAGCAAGTTTTAAGGTATATAAAGATGCAAGACCTGAGATTGTGTTAAATTGTGGTCCACAACCACGATTGCACC

Coding sequences of Glyma18g03100

Limit To All Plant Sequences

>Glyma18g03100.1   sequence type=CDS   gene model=Glyma18g03100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGA

>Glyma18g03100.2   sequence type=CDS   gene model=Glyma18g03100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGCAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGA

Predicted protein sequences of Glyma18g03100

Limit To All Plant Sequences

>Glyma18g03100.1   sequence type=predicted peptide   gene model=Glyma18g03100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASHNYKVFSCFNRKFTVTEPGPPPDVQKAFSEFADGASSLSGDHLLRFLAKHQGEVDCTAVDSERILQQSRKEDRESGLDLHDFFRFLLHDDFNSPIKSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDEDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKEYDDKDNEKESADELSSLPDQTSEQETDDKSAPEYKHLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLWYMQGMFRANGRCGYVKKPEFLIEKGPHNEVFDPRRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTSVISNNWFPVWDEEFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLHDEKGDKLKSVKLLMWFQFR*

>Glyma18g03100.2   sequence type=predicted peptide   gene model=Glyma18g03100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASHNYKVFSCFNRKFTVTEPGPPPDVQKAFSEFADGASSLSGDHLLRFLAKHQGEVDCTAVDSERILQQSRKEDRESGLDLHDFFRFLLHDDFNSPIKSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDEDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKEYDDKDNEKESADELSSLPDQTSEQETDDKQSAPEYKHLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLWYMQGMFRANGRCGYVKKPEFLIEKGPHNEVFDPRRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTSVISNNWFPVWDEEFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLHDEKGDKLKSVKLLMWFQFR*

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