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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40116 | AT | Annotation by Michelle Graham. TAIR10: Phosphoinositide-specific phospholipase C family protein | chr2:16751782-16754311 FORWARD LENGTH=613 | SoyBase | E_val: 0 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004435 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phospholipase C activity | SoyBase | N/A | ISS |
| GO:0004629 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| KOG0169 | KOG | Phosphoinositide-specific phospholipase C | JGI | ISS | |
| PTHR10336 | Panther | PHOSPHOLIPASE C-RELATED | JGI | ISS | |
| PTHR10336:SF35 | Panther | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY P | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| PF00387 | PFAM | Phosphatidylinositol-specific phospholipase C, Y domain | JGI | ISS | |
| PF00388 | PFAM | Phosphatidylinositol-specific phospholipase C, X domain | JGI | ISS | |
| PF09279 | PFAM | Phosphoinositide-specific phospholipase C, efhand-like | JGI | ISS | |
| UniRef100_I1MZ22 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MZ22_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P93620 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoinositide-specific phospholipase C n=1 Tax=Vigna unguiculata RepID=P93620_VIGUN | SoyBase | E_val: 0 | ISS |
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Glyma18g03100 not represented in the dataset |
Glyma18g03100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g35300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g027200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g03100.2 sequence type=transcript gene model=Glyma18g03100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGAAAGATAAATATTTTTCCATAAATGGAACTGTCCTTGGTTCGTGGCCTCATGTATGTAGCATTCATAGTCACAACACGTATACTACAATTGCATAGTGCTGCGATCGCCGTTTCTTCTCTGAAACAAACACACCGACACCAATCACTCTCTTTGATCCATTCCGTTTAGACGATTAGCTTTTACGATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGCAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGAATTATAGGATCAGCCATATAATAATCTTAGATAATGGATATGAGGTCATTGTAATGATAATTATATTTATCTTTAGCTGCTTGCAATGGTATTTCTGGCTTTACTATGTTATATTTTCTGCACCATCAACATCAATATAAAACAGTATTAAGAACTTCCAATATTGTCACATGGCCTTTTAGATTACACTGATAGCAAGCAAGTTTTAAGGTATATAAAGATGCAAGACCTGAGATTGTGTTAAATTGTGGTCCACAACCACGATTGCACC
>Glyma18g03100.1 sequence type=CDS gene model=Glyma18g03100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGA >Glyma18g03100.2 sequence type=CDS gene model=Glyma18g03100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAGCCATAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCGGACGTCCAAAAAGCGTTTTCTGAATTTGCCGACGGAGCCTCCTCCCTGTCCGGCGATCACCTCCTCCGATTTCTGGCGAAGCACCAGGGCGAAGTGGACTGCACCGCAGTGGATTCGGAGCGGATCCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGACTGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGACTGCTCCATTGTCACATTATTTCATTTATACTGGGCACAATTCCTATCTTACCGGGAATCAACTGAGCAGTGACTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACGAGGTGTGAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACGAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCATTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGCCGAATTCTTATATCAACCAAACCACCAAAAGAATTTCTTGAATCCAAAGAATATGATGACAAGGACAATGAAAAGGAATCAGCTGACGAGCTTTCATCATTGCCAGATCAAACTAGTGAACAGGAAACTGATGATAAGCAGAGTGCACCTGAGTACAAACACTTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATACAGGATGAATTAAAAGCTGCTGGAGCAGTTAGGCGCTTAAGCTTAAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACACAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACGTATGGAGCTCAGATGGTTGCGTTTAACATGCAGGGGTATGGCAAATCACTTTGGTACATGCAAGGAATGTTTAGAGCAAACGGACGATGCGGTTATGTGAAAAAACCTGAATTTCTTATTGAGAAAGGTCCACATAATGAGGTTTTTGATCCTAGAAGAACATTGCCTGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACTGGTTGGAGCTTAGATTTCAGCCAAACAGACTTTGATACTTACTCGCCACCAGATTTTTATGTTAAGGTTTGTATTGTTGGAGTTCCTGCTGATATGGCCAAGAAGAAAACAAGTGTAATTTCAAATAACTGGTTTCCTGTTTGGGATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGATAAGAGTCAGAAGGATGACTTTGGTGGACAGACATGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTCCATGATGAAAAGGGTGACAAATTAAAATCTGTGAAGCTTCTGATGTGGTTTCAGTTTAGATGA
>Glyma18g03100.1 sequence type=predicted peptide gene model=Glyma18g03100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASHNYKVFSCFNRKFTVTEPGPPPDVQKAFSEFADGASSLSGDHLLRFLAKHQGEVDCTAVDSERILQQSRKEDRESGLDLHDFFRFLLHDDFNSPIKSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDEDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKEYDDKDNEKESADELSSLPDQTSEQETDDKSAPEYKHLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLWYMQGMFRANGRCGYVKKPEFLIEKGPHNEVFDPRRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTSVISNNWFPVWDEEFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLHDEKGDKLKSVKLLMWFQFR* >Glyma18g03100.2 sequence type=predicted peptide gene model=Glyma18g03100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASHNYKVFSCFNRKFTVTEPGPPPDVQKAFSEFADGASSLSGDHLLRFLAKHQGEVDCTAVDSERILQQSRKEDRESGLDLHDFFRFLLHDDFNSPIKSQVHHDMTAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQRGVRVIELDLWPNSDEDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKEYDDKDNEKESADELSSLPDQTSEQETDDKQSAPEYKHLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLWYMQGMFRANGRCGYVKKPEFLIEKGPHNEVFDPRRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTSVISNNWFPVWDEEFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLHDEKGDKLKSVKLLMWFQFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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