SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09870 | AT | Annotation by Michelle Graham. TAIR10: histidine acid phosphatase family protein | chr1:3205817-3208444 FORWARD LENGTH=487 | SoyBase | E_val: 0 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003993 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| KOG1382 | KOG | Multiple inositol polyphosphate phosphatase | JGI | ISS | |
| PTHR20963 | Panther | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED | JGI | ISS | |
| PTHR20963:SF8 | Panther | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE | JGI | ISS | |
| PF00328 | PFAM | Histidine acid phosphatase | JGI | ISS | |
| UniRef100_G7YZH4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatase n=1 Tax=Glycine max RepID=G7YZH4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MZ00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MZ00_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g02810 not represented in the dataset |
Glyma18g02810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g024700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g02810.3 sequence type=transcript gene model=Glyma18g02810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAAAGCATTATATAAATGCTGACAGACTTTGACGGTAATACCAATTCGGAAGTGCAAGCGCAGAGAGAAGAATGAACAACTCTATTATGGCTTTTGTTCTGCTAATATTACTTTCGGCGTTACGCTACTCAAGCGCCGAACAAGCTTTCGATGTTCGCAAACATCTTTCCACTGTCTCCAGATATGGAGTTGTGAAAGACATCGCTGACACTAACTTCGTGCCTTCTAAAATCCCCGAGGGATGTGTTCCGATCCATTTGAATCTCGTGGCGAGGCATGGAACTCGATCTCCTACAAAGAAAAGGATAAAGGAGTTAGATAATTTGTCAGAGCGTCTGGAAGTTCTTGTAAGGGATTCAAAAGAGCGAAATTTGCCTTTCCAGAGAGTTCCTTCCTGGCTAAATGGATGGAAATCTCCTTGGCATGGAAGGCGTAAGGGCGGTGAACTAATTACCAAAGGAGAGGAAGAATTATATGATCTTGGAATCAGAATTAGAGAAAACTTTCCAAATTTGTTTGATGAGGAATACCATCCAGACATATATCCTATTAAGGCAACTCAGGTTCCCCGGGCATCTGCTAGTGCAGTCGCATTTGGAATGGGGCTTTTCAGTGGAAATGGAAGTCTTGGACCTGGGCATCACCGAGCCTTTGCTGTTACAAGCGAAAGCCGTGCTAGCGACATTGTGCTGAGATTTCATGATTGCTGTCATAATTACAAGGCTTATCGGAAAAGCCAGGAATCTGCAGTTAGTAAACTTAAGGAACCTATCTTGGATGAGATTACATCTGCCTTAATTGGGCGCCATGGGCTGAATTTTACGAGGCAGGATACATCTTCTCTCTGGTTTTTGTGTAAGCAGGAAGCATCCTTGTTGGATATAACTAATCAAGCGTGTAGTCTTTTCAGCCCTCTTGAGATTGAATTGCTGGAGTGGACAGATGATTTGGAGGTGTTTATTTTGAAGGGTTATGGTAAATCACTAAACTATAGAATGGGACTGCCATTACTTGAAGATGTTGTTCAATCCATGGAACAGGCTATCATGGCTGAAGAAGAAAGACATGTTCCTGGAAGCTTTGAAAAGGCAAGACTTCGGTTTGCGCACGCTGAAACTGTAGTTCCATTCTCATGCCTGCTTGGTTTATTTCTTGAAGGATCTGAGTTAAAAAAAATTCAGAAGGAGCAACCTTTGCAGCACCCTCCGAAGCCTCCACAGAAAAGAAAATGGCGGGGTAGCACTGTGGCCCCTTTTGCTGGTAACAACATGTTGATCTTGTATAGTTGTCCTGCTCCAGACAAATCTACCAGCAAGCACTTTGTACAAGTGTTACACAACGAACACCCTGTTCCATTGCCAGGTTGTGATGGCTCCGATTTCTGTCCATTTGAAGTATTCAAGGAAAAAATAGTTGCACCTCATCAGAAGCATGATTACCATACAGTCTGTAATGAAAAGCTAGAGCAGGAGCCCTCGGGCAACAAGGTTTTTCAAATATTTCAGTGGCTTTTCTCACCAAGGAAAGGTGATAAGTACCCTAAAAATGAACTTTAGTTTGTTTCCTAGGAAAGGAGCCTCAAATCTTACGCTCTTAATAATTCAGACATGAGCGCTTATTCCTTCTAGCAGATAATCAATTTTACTTAGATTGTGCTGCCAGTACAGGAATGCCTTTGTTATCTTAAGCTTGATGCCCGAGTCCTCCTCGTCTGTAGCTTCTAACATTAAGAGAAATTGGGGGTGGAAAGTTTAGTTCTAATTTATTTTTTTTCCTTAGTAGCGTTACTCTTAGTACTCGGCTGATACCTCAGATAATGTAGCTTGATGTGTCATACTGTGCACACTCTTAGTTTCATTAACTGTCTCTTGAACTCCATTTTTGTTCTTTTTGAATAGTAGATAATGGACCAGGTAACCTTTGACTATACTTATGTTTGTGTTTTTGTGTTTCTTGTTGCAG
>Glyma18g02810.2 sequence type=CDS gene model=Glyma18g02810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAACTCTATTATGGCTTTTGTTCTGCTAATATTACTTTCGGCGTTACGCTACTCAAGCGCCGAACAAGCTTTCGATGTTCGCAAACATCTTTCCACTGTCTCCAGATATGGAGTTGTGAAAGACATCGCTGACACTAACTTCGTGCCTTCTAAAATCCCCGAGGGATGTGTTCCGATCCATTTGAATCTCGTGGCGAGGCATGGAACTCGATCTCCTACAAAGAAAAGGATAAAGGAGTTAGATAATTTGTCAGAGCGTCTGGAAGTTCTTGTAAGGGATTCAAAAGAGCGAAATTTGCCTTTCCAGAGAGTTCCTTCCTGGCTAAATGGATGGAAATCTCCTTGGCATGGAAGGCGTAAGGGCGGTGAACTAATTACCAAAGGAGAGGAAGAATTATATGATCTTGGAATCAGAATTAGAGAAAACTTTCCAAATTTGTTTGATGAGGAATACCATCCAGACATATATCCTATTAAGGCAACTCAGGTTCCCCGGGCATCTGCTAGTGCAGTCGCATTTGGAATGGGGCTTTTCAGTGGAAATGGAAGTCTTGGACCTGGGCATCACCGAGCCTTTGCTGTTACAAGCGAAAGCCGTGCTAGCGACATTGTGCTGAGATTTCATGATTGCTGTCATAATTACAAGGCTTATCGGAAAAGCCAGGAATCTGCAGTTAGTAAACTTAAGGAACCTATCTTGGATGAGATTACATCTGCCTTAATTGGGCGCCATGGGCTGAATTTTACGAGGCAGGATACATCTTCTCTCTGGTTTTTGTGTAAGCAGGAAGCATCCTTGTTGGATATAACTAATCAAGCGTGTAGTCTTTTCAGCCCTCTTGAGATTGAATTGCTGGAGTGGACAGATGATTTGGAGGTGTTTATTTTGAAGGGTTATGGTAAATCACTAAACTATAGAATGGGACTGCCATTACTTGAAGATGTTGTTCAATCCATGGAACAGGCTATCATGGCTGAAGAAGAAAGACATGTTCCTGGAAGCTTTGAAAAGGCAAGACTTCGGTTTGCGCACGCTGAAACTGTAGTTCCATTCTCATGCCTGCTTGGTTTATTTCTTGAAGGATCTGAGTTAAAAAAAATTCAGAAGGAGCAACCTTTGCAGCACCCTCCGAAGCCTCCACAGAAAAGAAAATGGCGGGGTAGCACTGTGGCCCCTTTTGCTGGTAACAACATGTTGATCTTGTATAGTTGTCCTGCTCCAGACAAATCTACCAGCAAGCACTTTGTACAAGTGTTACACAACGAACACCCTGTTCCATTGCCAGGTTGTGATGGCTCCGATTTCTGTCCATTTGAAGTATTCAAGGAAAAAATAGTTGCACCTCATCAGAAGCATGATTACCATACAGTCTGTAATGAAAAGCTAGAGCAGGAGCCCTCGGGCAACAAGGTTTTTCAAATATTTCAGTGGCTTTTCTCACCAAGGAAAGGTGATAAGTACCCTAAAAATGAACTTTAG >Glyma18g02810.3 sequence type=CDS gene model=Glyma18g02810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAACTCTATTATGGCTTTTGTTCTGCTAATATTACTTTCGGCGTTACGCTACTCAAGCGCCGAACAAGCTTTCGATGTTCGCAAACATCTTTCCACTGTCTCCAGATATGGAGTTGTGAAAGACATCGCTGACACTAACTTCGTGCCTTCTAAAATCCCCGAGGGATGTGTTCCGATCCATTTGAATCTCGTGGCGAGGCATGGAACTCGATCTCCTACAAAGAAAAGGATAAAGGAGTTAGATAATTTGTCAGAGCGTCTGGAAGTTCTTGTAAGGGATTCAAAAGAGCGAAATTTGCCTTTCCAGAGAGTTCCTTCCTGGCTAAATGGATGGAAATCTCCTTGGCATGGAAGGCGTAAGGGCGGTGAACTAATTACCAAAGGAGAGGAAGAATTATATGATCTTGGAATCAGAATTAGAGAAAACTTTCCAAATTTGTTTGATGAGGAATACCATCCAGACATATATCCTATTAAGGCAACTCAGGTTCCCCGGGCATCTGCTAGTGCAGTCGCATTTGGAATGGGGCTTTTCAGTGGAAATGGAAGTCTTGGACCTGGGCATCACCGAGCCTTTGCTGTTACAAGCGAAAGCCGTGCTAGCGACATTGTGCTGAGATTTCATGATTGCTGTCATAATTACAAGGCTTATCGGAAAAGCCAGGAATCTGCAGTTAGTAAACTTAAGGAACCTATCTTGGATGAGATTACATCTGCCTTAATTGGGCGCCATGGGCTGAATTTTACGAGGCAGGATACATCTTCTCTCTGGTTTTTGTGTAAGCAGGAAGCATCCTTGTTGGATATAACTAATCAAGCGTGTAGTCTTTTCAGCCCTCTTGAGATTGAATTGCTGGAGTGGACAGATGATTTGGAGGTGTTTATTTTGAAGGGTTATGGTAAATCACTAAACTATAGAATGGGACTGCCATTACTTGAAGATGTTGTTCAATCCATGGAACAGGCTATCATGGCTGAAGAAGAAAGACATGTTCCTGGAAGCTTTGAAAAGGCAAGACTTCGGTTTGCGCACGCTGAAACTGTAGTTCCATTCTCATGCCTGCTTGGTTTATTTCTTGAAGGATCTGAGTTAAAAAAAATTCAGAAGGAGCAACCTTTGCAGCACCCTCCGAAGCCTCCACAGAAAAGAAAATGGCGGGGTAGCACTGTGGCCCCTTTTGCTGGTAACAACATGTTGATCTTGTATAGTTGTCCTGCTCCAGACAAATCTACCAGCAAGCACTTTGTACAAGTGTTACACAACGAACACCCTGTTCCATTGCCAGGTTGTGATGGCTCCGATTTCTGTCCATTTGAAGTATTCAAGGAAAAAATAGTTGCACCTCATCAGAAGCATGATTACCATACAGTCTGTAATGAAAAGCTAGAGCAGGAGCCCTCGGGCAACAAGGTTTTTCAAATATTTCAGTGGCTTTTCTCACCAAGGAAAGGTGATAAGTACCCTAAAAATGAACTTTAG
>Glyma18g02810.2 sequence type=predicted peptide gene model=Glyma18g02810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNNSIMAFVLLILLSALRYSSAEQAFDVRKHLSTVSRYGVVKDIADTNFVPSKIPEGCVPIHLNLVARHGTRSPTKKRIKELDNLSERLEVLVRDSKERNLPFQRVPSWLNGWKSPWHGRRKGGELITKGEEELYDLGIRIRENFPNLFDEEYHPDIYPIKATQVPRASASAVAFGMGLFSGNGSLGPGHHRAFAVTSESRASDIVLRFHDCCHNYKAYRKSQESAVSKLKEPILDEITSALIGRHGLNFTRQDTSSLWFLCKQEASLLDITNQACSLFSPLEIELLEWTDDLEVFILKGYGKSLNYRMGLPLLEDVVQSMEQAIMAEEERHVPGSFEKARLRFAHAETVVPFSCLLGLFLEGSELKKIQKEQPLQHPPKPPQKRKWRGSTVAPFAGNNMLILYSCPAPDKSTSKHFVQVLHNEHPVPLPGCDGSDFCPFEVFKEKIVAPHQKHDYHTVCNEKLEQEPSGNKVFQIFQWLFSPRKGDKYPKNEL* >Glyma18g02810.3 sequence type=predicted peptide gene model=Glyma18g02810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNNSIMAFVLLILLSALRYSSAEQAFDVRKHLSTVSRYGVVKDIADTNFVPSKIPEGCVPIHLNLVARHGTRSPTKKRIKELDNLSERLEVLVRDSKERNLPFQRVPSWLNGWKSPWHGRRKGGELITKGEEELYDLGIRIRENFPNLFDEEYHPDIYPIKATQVPRASASAVAFGMGLFSGNGSLGPGHHRAFAVTSESRASDIVLRFHDCCHNYKAYRKSQESAVSKLKEPILDEITSALIGRHGLNFTRQDTSSLWFLCKQEASLLDITNQACSLFSPLEIELLEWTDDLEVFILKGYGKSLNYRMGLPLLEDVVQSMEQAIMAEEERHVPGSFEKARLRFAHAETVVPFSCLLGLFLEGSELKKIQKEQPLQHPPKPPQKRKWRGSTVAPFAGNNMLILYSCPAPDKSTSKHFVQVLHNEHPVPLPGCDGSDFCPFEVFKEKIVAPHQKHDYHTVCNEKLEQEPSGNKVFQIFQWLFSPRKGDKYPKNEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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