Glyma18g02681 - SoyBase

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Report for Sequence Feature Glyma18g02681

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1711510
stop:	1714820
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g02681

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51740	AT	Annotation by Michelle Graham. TAIR10: inflorescence meristem receptor-like kinase 2 \| chr3:19189248-19191842 FORWARD LENGTH=836	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF863	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C0SW30	UniRef	Annotation by Michelle Graham. Best UniRef hit: RHG1 n=1 Tax=Glycine max RepID=C0SW30_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C0SW30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RHG1 n=1 Tax=Glycine max RepID=C0SW30_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g02681

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g02681 not represented in the dataset	Glyma18g02681 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g02681

Paralog	Evidence	Comments
Glyma11g35710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g02681 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g023500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g02681

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g02681

Limit To All Plant Sequences

>Glyma18g02681.1   sequence type=CDS   gene model=Glyma18g02681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGTAGCAGTGGAGAAAACCAACCTCACTTCACAATCACAATGCTTCAACCGTGTTTCTGACAAGAAGAAAGAAAGATGCAAGACACACATGAACAACGTTAACCCATGTTGTTTTTTGTTTCTCTTATGTGTGTGGAGCCTTGTTGTGCTCCCCTCATGCGTGAGGCCAGTTTTGTGTGAAGATGAAGGTTGGGATGGAGTGGTTGTGACAGCATCAAACCTCTTAGCACTTGAAGCTTTCAAGCAAGAGTTGGTTGATCCAGAAGGGTTCTTGCGGAGCTGGAATGACAGTGGCTATGGAGCTTGTTCCGGAGGTTGGGTTGGAATCAAGTGTGCTAAGGGACAGGTTATTGTGATCCAGCTTCCTTGGAAGGGTTTGAGGGGTCGAATCACCGACAAAATTGGTCAACTTCAAGGCCTCAGGAAGCTTAGTCTTCATGATAACCAAATTGGTGGTTCAATCCCTTCAACTTTGGGACTTCTTCCCAACCTTAGAGGGGTTCAGTTATTCAACAATAGGCTTACAGGTTCCATACCTCTTTCTTTAGGTTTCTGCCCTTTGCTTCAGTCTCTTGACCTCAGCAACAACTTGCTCACAGGAGCAATCCCTTATAGTCTTGCTAATTCCACTAAGCTTTATTGGCTTAACTTGAGTTTCAACTCCTTCTCTGGTCCTTTACCAGCTAGCCTAACTCACTCATTTTCTCTCACTTTTCTTTCTCTTCAAAATAACAATCTTTCTGGCTCCCTTCCTAACTCTTGGGGTGGGAATTCCAAGAATGGCTTCTTTAGGCTTCAAAATTTGATCCTAGATCATAACTTTTTCACTGGTGACGTTCCTGCTTCTTTGGGTAGCTTAAGAGAGCTCAATGAGATTTCCCTTAGTCATAATAAGTTTAGTGGAGCTATACCAAATGAAATAGGAACCCTTTCTAGGCTTAAGACACTTGACATTTCTAATAATGCCTTGAATGGGAACTTGCCTGCTACCCTATCTAATTTATCCTCACTTACACTGCTGAATGCAGAGAACAACCTCCTTGACAATCAAATTCCTCAAAGTTTAGGTAGATTGCGTAATCTTTCTGTTCTGATTTTGAGTAGAAACCAATTTAGTGGACATATTCCTTCAAGTATTGCAAACATTTCCTCGCTTAGGCAGCTTGATTTGTCACTGAATAATTTCAGTGGAGAAATTCCAGTCTCCTTTGACAGTCAGCGCAGTCTAAATCTCTTCAATGTTTCCTACAATAGCCTCTCAGGTTCTGTCCCCCCTCTGCTTGCCAAGAAATTTAACTCAAGCTCATTTGTGGGAAATATTCAACTATGTGGATACAGCCCTTCAACCCCATGTCTTTCCCAAGCTCCATCACAAGGAGTCATTGCCCCACCTCCTGAAGTGTCAAAACATCACCATCATAGGAAGCTAAGCACCAAAGACATAATTCTCATAGTAGCAGGAGTTCTCCTCGTAGTCCTGATTATACTTTGTTGTGTCCTGCTTTTCTGCCTGATCAGAAAGAGATCAACATCTAAGGCCGGGAACGGCCAAGCCACCGAGGGTAGAGCGGCCACTATGAGGACAGAAAAAGGAGTCCCTCCAGTTGCTGGTGGTGATGTTGAAGCAGGTGGGGAGGCTGGAGGGAAACTAGTCCATTTTGATGGACCAATGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCTGAGATCATGGGAAAGAGCACCTATGGAACTGTTTATAAGGCTATTTTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGGGAAAAGATCACTAAAGGTCATAGAGAATTTGAATCAGAAGTCAGTGTTCTAGGAAAAATTAGACACCCCAATGTTTTGGCTCTGAGAGCCTATTACTTGGGACCCAAAGGGGAAAAGCTTCTGGTTTTTGATTACATGTCTAAAGGAAGTCTTGCTTCTTTCCTACATGGTGGTGGAACTGAAACATTCATTGATTGGCCAACAAGAATGAAAATAGCACAAGACTTGGCCCGTGGCTTGTTCTGCCTTCATTCCCAGGAGAACATCATACATGGGAACCTCACATCCAGCAATGTGTTGCTTGATGAGAATACAAATGCTAAAATTGCAGATTTTGGTCTTTCTCGGTTGATGTCAACTGCTGCTAATTCCAACGTGATAGCTACAGCTGGAGCATTGGGATACCGGGCACCTGAGCTCTCAAAGCTCAAGAAAGCAAACACTAAAACTGATATCTACAGTCTTGGTGTTATCTTGTTAGAACTCCTAACGAGGAAATCACCTGGGGTGTCTATGAATGGACTAGATTTGCCTCAGTGGGTTGCCTCAGTTGTCAAAGAGGAGTGGACAAATGAGGTTTTTGATGCAGACTTGATGAGAGATGCATCCACAGTTGGCGACGAGTTGCTAAACACGTTGAAGCTCGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTTCATCAAGTTCTCCAGCAGCTGGAAGAGATTAGACCAGAGAGATCAGTCACAGCCAGTCCCGGGGACGATATCGTATAG

Predicted protein sequences of Glyma18g02681

Limit To All Plant Sequences

>Glyma18g02681.1   sequence type=predicted peptide   gene model=Glyma18g02681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVAVEKTNLTSQSQCFNRVSDKKKERCKTHMNNVNPCCFLFLLCVWSLVVLPSCVRPVLCEDEGWDGVVVTASNLLALEAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAKGQVIVIQLPWKGLRGRITDKIGQLQGLRKLSLHDNQIGGSIPSTLGLLPNLRGVQLFNNRLTGSIPLSLGFCPLLQSLDLSNNLLTGAIPYSLANSTKLYWLNLSFNSFSGPLPASLTHSFSLTFLSLQNNNLSGSLPNSWGGNSKNGFFRLQNLILDHNFFTGDVPASLGSLRELNEISLSHNKFSGAIPNEIGTLSRLKTLDISNNALNGNLPATLSNLSSLTLLNAENNLLDNQIPQSLGRLRNLSVLILSRNQFSGHIPSSIANISSLRQLDLSLNNFSGEIPVSFDSQRSLNLFNVSYNSLSGSVPPLLAKKFNSSSFVGNIQLCGYSPSTPCLSQAPSQGVIAPPPEVSKHHHHRKLSTKDIILIVAGVLLVVLIILCCVLLFCLIRKRSTSKAGNGQATEGRAATMRTEKGVPPVAGGDVEAGGEAGGKLVHFDGPMAFTADDLLCATAEIMGKSTYGTVYKAILEDGSQVAVKRLREKITKGHREFESEVSVLGKIRHPNVLALRAYYLGPKGEKLLVFDYMSKGSLASFLHGGGTETFIDWPTRMKIAQDLARGLFCLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMSTAANSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVILLELLTRKSPGVSMNGLDLPQWVASVVKEEWTNEVFDADLMRDASTVGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPERSVTASPGDDIV*

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