Glyma18g02650 - SoyBase

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Report for Sequence Feature Glyma18g02650

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1681003
stop:	1683616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g02650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G34930	AT	Annotation by Michelle Graham. TAIR10: arogenate dehydrogenase \| chr5:13233391-13235522 FORWARD LENGTH=640	SoyBase	E_val: 7.00E-99	ISS
GO:0006567	GO-bp	Annotation by Michelle Graham. GO Biological Process: threonine catabolic process	SoyBase	N/A	ISS
GO:0006571	GO-bp	Annotation by Michelle Graham. GO Biological Process: tyrosine biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004665	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0008977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase activity	SoyBase	N/A	ISS
PF02153	PFAM	Prephenate dehydrogenase	JGI		ISS
UniRef100_G7J2E9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arogenate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7J2E9_MEDTR	SoyBase	E_val: 2.00E-158	ISS
UniRef100_I1MYY4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYY4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g02650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g02650

Paralog	Evidence	Comments
Glyma11g35760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g02650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g023100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g02650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g02650

Limit To All Plant Sequences

>Glyma18g02650.2   sequence type=transcript   gene model=Glyma18g02650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACGTGTATGGCAATGGACATAGAAGCATTAAATAGGCCTCGTTACATTCAAGTTTCAACCAAATTGGCAGGGAAAATCCTCTGATACTGTTGTTTTCCTGAAACCATCACAATTTGTTTCTCAATCATGTCAACCTCATCCTCTTCCCAAAGCCTCAAAATTGGCATAGTTGGATTCGGCAACTTTGGCCAGTTTCTGGCCAAGACAATGATAAAACAAGGCCACACTCTCACAGCAACTTCTCGATCTGATTACTCTGAACTTTGTCTCCAAATGGGCATCCATTTTTTCAGGGATGTCAGCGCATTCCTTACCGCAGACATAGATGTCATAGTGTTGTGCACATCGATATTATCGCTATCCGAGGTTGTCGGGTCAATGCCACTCACCTCCCTGAAGCGACCAACGCTCTTTGTTGATGTTCTTTCTGTCAAAGAGCACCCAAGAGAGCTTCTACTGCGAGAGTTGCCAGAGGATTCGGACATACTCTGCACGCACCCAATGTTTGGTCCTCAGACTGCCAAGAATGGATGGACAGATCACACTTTCATGTATGACAAAGTTCGGATAAGAGACGAAGTTATCTGCTCTAATTTCATCCAAATTTTTGCTACTGAGGGTTGCAAGATGGTACAGATGTCCTGTGAGGAACATGACAGAGCAGCTGCTAAGAGCCAATTTATCACTCACACAATTGGCAGGTATGCAGCTTCCTACATATCTAATAAACCATTGAGAAGCACTAATATAAATGCTCACTAGATGTAACTTTTGGCTGCTTCTTGATCAGGACACTGGGAGAAATGGATATTCAATCCACACCTATTGACACTAAGGGCTTCGAGACACTTGTTAAATTGGTAAAGAGTTGTTAACATTTCCCCTACTTTCTCTAAAAAAATTCCTTTATATGTGGTTATGTATCATATGGAAAAGTTACTTGCAGAAGGAGACGATGATGAGAAATAGTTTTGATTTGTATAGTGGATTATTCGTGTATAACAGATTCGCCAGACAAGAGGTAATGGAACTGCCAACGAAATGCTTATTTACTTTTAAATTCCATTTTAAAGCACTGAACCAAGTACCCCAAGATAGACTCATGAATTGTGAAAAATATGCAGCTGGAAAACCTTGAACATGCCTTGCACAAAGTCAAAGAAACGCTGATGATACAAAGGACGAATGGGGAGCAGGGTCATAAAAGAACTGAAAGTTGATGCATATTTATTTTACAAGATATTTTCTCTAACTCTCAAATATCCTCCTGCAGTTCCAATTATAAATTACTCTTATTTCAGTTTCCTTTTACCAAAATTGAAGTTCAATTAATAAACCAAAGAGACTGGTATATGTTCAATCACATGCGATAAAAATGTTCCACGTTCTTGTTCCGAGCAGATTCTTTGTAATTTCATAAAGTTAGAGAAAAGAAAAAAAAAACAGACATTTAGTCGCCAATGCCTAAAACCATATAATAACTCCACAGTTTGGTTCTCTGAATGAATTCCCTTCATTTTAATCCAAATCTCAACTACCTCTTCAATTCTAAACAAATAAATTAGAACACTACCAAGTGATCCTCTGGGGTCTTGACATGAGCCTTCTAGTTCTAGCTTTTCAATCAATGTATCTACAGAGCATGTATTCCATTTTGGATTATAGAGAAATAATGTAAAACTTTTAACCAAATGTTACTGCAAATCTAAAGAAAGTTCATTGCTC

Coding sequences of Glyma18g02650

Limit To All Plant Sequences

>Glyma18g02650.1   sequence type=CDS   gene model=Glyma18g02650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACCTCATCCTCTTCCCAAAGCCTCAAAATTGGCATAGTTGGATTCGGCAACTTTGGCCAGTTTCTGGCCAAGACAATGATAAAACAAGGCCACACTCTCACAGCAACTTCTCGATCTGATTACTCTGAACTTTGTCTCCAAATGGGCATCCATTTTTTCAGGGATGTCAGCGCATTCCTTACCGCAGACATAGATGTCATAGTGTTGTGCACATCGATATTATCGCTATCCGAGGTTGTCGGGTCAATGCCACTCACCTCCCTGAAGCGACCAACGCTCTTTGTTGATGTTCTTTCTGTCAAAGAGCACCCAAGAGAGCTTCTACTGCGAGAGTTGCCAGAGGATTCGGACATACTCTGCACGCACCCAATGTTTGGTCCTCAGACTGCCAAGAATGGATGGACAGATCACACTTTCATGTATGACAAAGTTCGGATAAGAGACGAAGTTATCTGCTCTAATTTCATCCAAATTTTTGCTACTGAGGGTTGCAAGATGGTACAGATGTCCTGTGAGGAACATGACAGAGCAGCTGCTAAGAGCCAATTTATCACTCACACAATTGGCAGGACACTGGGAGAAATGGATATTCAATCCACACCTATTGACACTAAGGGCTTCGAGACACTTGTTAAATTGAAGGAGACGATGATGAGAAATAGTTTTGATTTGTATAGTGGATTATTCGTGTATAACAGATTCGCCAGACAAGAGCTGGAAAACCTTGAACATGCCTTGCACAAAGTCAAAGAAACGCTGATGATACAAAGGACGAATGGGGAGCAGGGTCATAAAAGAACTGAAAGTTGA

>Glyma18g02650.2   sequence type=CDS   gene model=Glyma18g02650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACCTCATCCTCTTCCCAAAGCCTCAAAATTGGCATAGTTGGATTCGGCAACTTTGGCCAGTTTCTGGCCAAGACAATGATAAAACAAGGCCACACTCTCACAGCAACTTCTCGATCTGATTACTCTGAACTTTGTCTCCAAATGGGCATCCATTTTTTCAGGGATGTCAGCGCATTCCTTACCGCAGACATAGATGTCATAGTGTTGTGCACATCGATATTATCGCTATCCGAGGTTGTCGGGTCAATGCCACTCACCTCCCTGAAGCGACCAACGCTCTTTGTTGATGTTCTTTCTGTCAAAGAGCACCCAAGAGAGCTTCTACTGCGAGAGTTGCCAGAGGATTCGGACATACTCTGCACGCACCCAATGTTTGGTCCTCAGACTGCCAAGAATGGATGGACAGATCACACTTTCATGTATGACAAAGTTCGGATAAGAGACGAAGTTATCTGCTCTAATTTCATCCAAATTTTTGCTACTGAGGGTTGCAAGATGGTACAGATGTCCTGTGAGGAACATGACAGAGCAGCTGCTAAGAGCCAATTTATCACTCACACAATTGGCAGGTATGCAGCTTCCTACATATCTAATAAACCATTGAGAAGCACTAATATAAATGCTCACTAG

Predicted protein sequences of Glyma18g02650

Limit To All Plant Sequences

>Glyma18g02650.1   sequence type=predicted peptide   gene model=Glyma18g02650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSSSSQSLKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSELCLQMGIHFFRDVSAFLTADIDVIVLCTSILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGPQTAKNGWTDHTFMYDKVRIRDEVICSNFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHTIGRTLGEMDIQSTPIDTKGFETLVKLKETMMRNSFDLYSGLFVYNRFARQELENLEHALHKVKETLMIQRTNGEQGHKRTES*

>Glyma18g02650.2   sequence type=predicted peptide   gene model=Glyma18g02650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSSSSQSLKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSELCLQMGIHFFRDVSAFLTADIDVIVLCTSILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGPQTAKNGWTDHTFMYDKVRIRDEVICSNFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHTIGRYAASYISNKPLRSTNINAH*

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