SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56200 | AT | Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein | chr3:20850087-20851779 FORWARD LENGTH=435 | SoyBase | E_val: 1.00E-180 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1305 | KOG | Amino acid transporter protein | JGI | ISS | |
| PTHR22950 | Panther | AMINO ACID TRANSPORTER | JGI | ISS | |
| PF01490 | PFAM | Transmembrane amino acid transporter protein | JGI | ISS | |
| UniRef100_G7J2G3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sodium-coupled neutral amino acid transporter n=1 Tax=Medicago truncatula RepID=G7J2G3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MYX7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MYX7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g02580 not represented in the dataset |
Glyma18g02580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g35830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g022400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g02580.1 sequence type=CDS gene model=Glyma18g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCCGGCCGCCGGAGTCAGCGTCCCCCTCCTGGGGGATTCCAAAGGAACGCCGCCGCCGGCTTCCGTCCCCGGCGCGGTGTTCAACGTGGCCACCAGCATAGTCGGCGCCGGAATCATGTCGATTCCGGCGATCATGAAGGTTCTCGGCGTAGTTCCCGCTTTCGCGATGATTCTCGTGGTGGCCGTGCTGGCGGAACTGTCCGTGGACTTCCTGATGCGGTTCACGCACTCCGGCGAAACGACGACGTACGCTGGCGTCATGAGGGAGGCGTTCGGATCGGGTGGAGCATTAGCCGCGCAAGTTTGCGTCATCATCACCAACGTTGGGGGTTTAATTCTCTACCTTATCATCATCGGAGATGTGCTATCTGGAAAGCAAAATGGAGGGGAAGTGCATTTGGGCATTTTGCAACAGTGGTTTGGAATTCACTGGTGGAATTCCCGGGAATTTGCTTTGCTTTTCACCTTGGTCTTTGTTATGCTTCCATTGGTATTGTACAAACGTGTAGAGTCCTTGAAGTACAGCTCTGCAGTGTCAACTCTTCTTGCAGTGGCATTTGTTGGCATATGTTGTGGGTTGGCTATCACAGCTCTGGTGCAAGGAAAAACACAAACTCCTAGATTGTTTCCTCGGCTAGACTACCAAACCTCATTCTTTGATCTGTTCACTGCAGTTCCTGTTGTTGTCACAGCCTTCACATTTCACTTTAATGTGCACCCCATTGGGTTTGAGCTTGCCAAGGCATCCCAAATGACAACAGCAGTTCGATTAGCATTATTGCTTTGTGCTGTGATCTACCTTGCAATAGGCTTATTTGGGTACATGTTATTTGGGGATTCAACCCAGTCAGACATTCTCATCAATTTTGACCAGAATGCTGGTTCAGCAGTTGGTTCCTTGCTCAATAGTTTGGTCCGTGTAAGCTATGCCCTCCACATCATGCTGGTGTTTCCTCTCTTGAACTTCTCTTTGAGAACCAACATAGATGAAGTTCTCTTCCCTAAGAAGCCTATGCTAGCCACAGACAACAAAAGATTTATGATCCTCACTCTGGTGCTGCTTGTATTCTCCTACCTTGCAGCTATAGCAATCCCAGATATTTGGTACTTCTTTCAGTTCCTGGGATCCTCATCCGCAGTGTGCCTTGCCTTCATTTTCCCCGGCTCTATTGTTTTAAGGGATGTTAAAGGTATATCAACGAGAAGAGACAAAATTATTGCACTGATAATGATTATACTAGCTGTGGTTACAAGTGTGCTTGCCATTTCCACCAACATATATAATGCTTTTAGTAGCAAGTCATAA
>Glyma18g02580.1 sequence type=predicted peptide gene model=Glyma18g02580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSPAAGVSVPLLGDSKGTPPPASVPGAVFNVATSIVGAGIMSIPAIMKVLGVVPAFAMILVVAVLAELSVDFLMRFTHSGETTTYAGVMREAFGSGGALAAQVCVIITNVGGLILYLIIIGDVLSGKQNGGEVHLGILQQWFGIHWWNSREFALLFTLVFVMLPLVLYKRVESLKYSSAVSTLLAVAFVGICCGLAITALVQGKTQTPRLFPRLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELAKASQMTTAVRLALLLCAVIYLAIGLFGYMLFGDSTQSDILINFDQNAGSAVGSLLNSLVRVSYALHIMLVFPLLNFSLRTNIDEVLFPKKPMLATDNKRFMILTLVLLVFSYLAAIAIPDIWYFFQFLGSSSAVCLAFIFPGSIVLRDVKGISTRRDKIIALIMIILAVVTSVLAISTNIYNAFSSKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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