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Report for Sequence Feature Glyma18g02310

Feature Type:gene_model
Chromosome:Gm18
Start:1460321
stop:1464545
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g02310
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G39680AT Annotation by Michelle Graham. TAIR10: SAP domain-containing protein | chr4:18414604-18416938 REVERSE LENGTH=633 SoyBaseE_val: 1.00E-107ISS
GO:0006259GO-bp Annotation by Michelle Graham. GO Biological Process: DNA metabolic process SoyBaseN/AISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
KOG2416 KOG Acinus (induces apoptotic chromatin condensation) JGI ISS
PTHR14127Panther APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS JGI ISS
PF02037PFAM SAP domain JGI ISS
UniRef100_G7J4D9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Apoptotic chromatin condensation inducer in the nucleus n=1 Tax=Medicago truncatula RepID=G7J4D9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233ECACUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ECAC related cluster n=1 Tax=unknown RepID=UPI000233ECAC SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g02310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g02310
ParalogEvidenceComments
Glyma11g36120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g02310 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g019700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g02310
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g02310
>Glyma18g02310.1   sequence type=CDS   gene model=Glyma18g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCAAAATATCAGATTCTTGACAACCGCCCTATTAATCAGTGGAAGGTTACAGAGCTAAAAGATGAGCTGAAGAGGAGGAAGTTAAGTATCAAGGGTTTGAAGGATGATTTGGTCAAGCGTTTGGATGAAGTCCTTCGTCTTGAAAGGGAGGCTGACGAGGCTTCTGAGAAGGATGAGGCCAATGGTTTCGATGGTCATGTAGATGGGGAAAAAGATTCAGAGGCGGTTACTGTGGATGCTGAAATGGTTGATTCAACTGACAGGGACAATGCCAAAACATTTGAGACTGCTGAAAAGGGCAAGAGCGGTGTAGTTGATCCTGTTGAAATAGAAAATGTGGAAAAGATTCCGGAGGTTGTGGATCACGACAGCAATAAGAATGACAAGCAGGATGGTGTTACCAACCAAGTTGACATTAATAATAGTGTGTCAGCCATAGATCAAGAGGTTGAACCTAAGGGCTTGCCAGCTGGTGGAGATTCTGCAAATGTGGGACAGGAGGCAATTGCCCATGGTTCTACTGTGGAGAAGACTACCATTACAGTTAATGAGAGTGTAGTAACAGAAGTAGTGGCCAGTGCTGAGGATTCTTATCGTGCAGAAAAGAATAATGAGGATTCAGCAGCAAAGCTGGAGAATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGACTCAAAGCCCCAGCTGGATTGTGACATCAAGCCCTTGCATGAGGATCCTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTCTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCAGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAAGAAAATTTCAATAATGTTTTAAGTCCAGACATGAACAAGACCAATAGCAGCGATGATGTGGGGTATCCCGAAGAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCTATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAAAGACAAAATAGAGATTGAAGAGCCTATTGTGAAGGAGGAAAGTAGTACTATAGCTGTTGGAGATGGTCTGTCTGCAGGAGAAAGTGATATCCACCAAGATATTGACATTAGTCCAGTTGCTCCAACAGAGAAACGAAAATTTAATGAACAAGCATCAGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGATGCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGATGAGCCAATTGCTTTGAAACGCAACTTCTCTAGGTCTGATTCCTCTGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCACCACAAAGGTCCCCAACTAATTCCCTCAGGATTGATCGTTTTCTCCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGTAAGACTGGGAATGTCAGCAGCTTCTGGATGGACCAAATAAAGACCCATTGCTATGTGACTTACTCGTCTGTGGATGAAGCCATTGAGACACGGAATGCTGTATATAATTTGCAATGGCCACCAAATGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAACCTCCTCCTACTCAGGCTGCATCTGTCAGCACTGTCCCAGCAGTTCCTCCTGCACCTCCCTCACAGCCAGAGCCTTCCCCTCGTCTGCACAGGGAGCCGCATCCAGTTCCAGCTACTCTCCCACCTCCACCACCATTGTCAAAACCCCCACCAGTAGCAAGAGAACGGCTTCCATCTCCACCACCCCTTCCTGAGAAAGTTGACCCACCCATTGTCACTCTGGATGATCTCTTTCGCAAAACCACAGCCACTCCTCGGATCTACTATCTACCTTTGTCTGAAGAGCAAGTTGCCTCAAAACTTACAGCACAGGGTAAAAGCGCGAGGCAGTAG
Predicted protein sequences of Glyma18g02310
>Glyma18g02310.1   sequence type=predicted peptide   gene model=Glyma18g02310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKYQILDNRPINQWKVTELKDELKRRKLSIKGLKDDLVKRLDEVLRLEREADEASEKDEANGFDGHVDGEKDSEAVTVDAEMVDSTDRDNAKTFETAEKGKSGVVDPVEIENVEKIPEVVDHDSNKNDKQDGVTNQVDINNSVSAIDQEVEPKGLPAGGDSANVGQEAIAHGSTVEKTTITVNESVVTEVVASAEDSYRAEKNNEDSAAKLENEESKAQLDGEDSKPQLDCDIKPLHEDPVPDSSVPENQVSEVNPSLGSQVKSDSISTDSLSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGLHEKKASVEENFNNVLSPDMNKTNSSDDVGYPEELNLDRSSGDDSMEEDLPETKQIDSKFNVDELKDKIEIEEPIVKEESSTIAVGDGLSAGESDIHQDIDISPVAPTEKRKFNEQASVGNNEPAKRQRRWNTETVKGPDAQSTTPRPATTPRDEPIALKRNFSRSDSSATDDTPKERIVPPPQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVDEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPPTQAASVSTVPAVPPAPPSQPEPSPRLHREPHPVPATLPPPPPLSKPPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVASKLTAQGKSARQ*






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