SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22125 | AT | Annotation by Michelle Graham. TAIR10: binding | chr2:9406793-9414223 FORWARD LENGTH=2150 | SoyBase | E_val: 0 | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0030243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0051211 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anisotropic cell growth | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| PTHR23315 | Panther | BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING | JGI | ISS | |
| PTHR23315:SF42 | Panther | BINDING | JGI | ISS | |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| PF00514 | PFAM | Armadillo/beta-catenin-like repeat | JGI | ISS | |
| UniRef100_G7J4D6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I P700 chlorophyll a apoprotein n=1 Tax=Medicago truncatula RepID=G7J4D6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MYV1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MYV1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g02300 not represented in the dataset |
Glyma18g02300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g36150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g019600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g02300.1 sequence type=CDS gene model=Glyma18g02300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGAAATGGTGATGGGAAGGCTCAAGATTCAGAGCCTCTACCTCCTCATTCAGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCTTTGAAGCAGTTATTGGAGCTTATAGATATGAGAGAAAATGCTTTCAGTGCTGTTGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAAATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGTTGCATTCCTCCTTTGCTTGGTCTACTAAAGTCCAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACTATTTTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGCTATGGGAGCAGCTGCAAAAGGGCCTGAAGACTGGAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAAAATCTCTCCAGCAGCACTGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTGGACATATTAATTAAGTTACTGACAACTGGGCAGTCTAGCACTTTAGCCAATGTGTGCTTTTTACTTGCTTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGTTGTTGACAGCAGAGACAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTCAGGGCTGAGGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAGTGCAAAGATGCAAGGAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCGTTACAGGAAAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGGTTGTCGTATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCTCCTACTCAAGCTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTACCTGGGCATCAGATCCTTTGGTAGTTGAGCAGACATTACTTGAACAATTTAAACCTCACTTGCCATTCCTTGTGCAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCTATATTGTCAATTAAACTTACAAACTCTGATGCAAAGCGTTTGCTTGTTGGTTTAATAACAATGGCTGCCAATGAAGTGCAAGAGGAGCTTCTAAAGTCTCTCTTGACATTGTGCAATACTGAATGCAGTCTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCAACAATCCTTAGGAACCTATGCGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGAAGTCGTTCCTGCATTGCTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACTTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACTAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCTAGTGATGCAATTGTTACAATGATAAAACTATTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCATCTGCTCTGGCGGGAATTTTTGAAACGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCTGAAAGTATCTTAATGGAGTCCTCGCGCTGCTTGGCTGCTATATTTCTTTCCATCAAAGAGAACAAGGATATGGCTGCTATTGCTAGAGATGCATTACCCTCCCTAGCTGCACTAGCTAACTCTTCAGTTTTAGAAGTGGCAGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAAGTCATCTTGGCTGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACACATGCTGCTGCAGCAATTGCTCGCCTCTTACATTCTAAGAGGCAAGTTGATTATTCTGTAACTGATTGTGTGAATCGAGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGACTTTGCTATTGATGAACATAGTTCCACATCAGAAGCTCTTGAAGCACTTGCCATGCTTTCCAGGTCAGATTTGACCAGTGCACACAGTAAACCTGCTTGGGCAGTTTTAGCTGAATTTCCTAAAAGCATAATCCCAATAGTTTTGTCTATTGCTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTTTGTTCTGGGAGACACTGTTGTTACTGCCTCTGGATGTATATCTTCTATAGCTAAAAGGATAATCAATTCCACTTCTAAAAATGTAAAGGTCAAAATTGGAGGAGCTGCTGTTCTTATTTGTGCTGCTAAAGTAAATCATCAGAAGCTGGTGGAGGACCTCAATTTATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTGGTCGATATGCTTATTTTTTCACAGGCTACATTGGATAATCAGGGTGATGACAGCAGGGAAGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATTGTAAATCAAGCACTGGCACCGCTCTTATTTCCAGTGCCAACTTAGCTATATGGTTACTGTCTGTTCTTGCTTGCCATGATGAAAAAAGTAAAATTGCAATAATGGAGGCTGGAGCAATTGAGGTTCTCACTGACAGGATTGCAGATTGTTTCTCACAATATAGTCAGATTGATTATAAAGAAGATAGCAGTATGTGGATTTGTGCTTTGTTGTTGGCAGTATTATTTCAAGATAGGGATATCATACGAGCGCATGCAACCATGAAATCTATACCAGCCCTTGCCAACTTATTGAAGTCAGAGGAATCAGCGAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATTCTGATATACAGGATCTTCTGGAATTGTCAGATGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATCTGCTCAAACCAATTCCAGAACGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTTCTATAGATTGTCCATCGAATAAGATTTTAATGGTTGAGGCAGGGGCCCTAGAGGCACTTTCCAAGTATCTTTCACTAGGTCCGCAAGATGCAACGGAAGAAGCTGCTACAGATTTGTTAGGAATTCTGTTTAGCAGTGCAGAAATTCGGAGACATGAGTCAGCATTTGGAGCTGTTACTCAACTTGTAGCTGTCTTGCGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAACCCTTCAAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATTCTCTCATCAGATTGCTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATTCGGTCTACAATGGCTGCTGCACATTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCACCATTCAGTTGTCCGTGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTTTATGGTAGGAATCATGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCAGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCGGCTGCTAAAGTAGTTGAACCCCTGTTTATGTTGCTGACAAGAGAAGAATTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTAGTTAATATCTTAGAACATCCGCAGTGTCGTGCTGATTACACATTGACTTGTCACCAAGTTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTACTTTTAGAAGAACACCTTCAGAAAGATCCGGTGACGCAACAGGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAAAGAGCTGTAAAGGCCCTGGTCAGTATTGCATTGATATGGCCAAATGAAATTGCAAAAGAAGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAATCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCTAGTATTCTACAATTTAGTTCTGAATACTACTTGGAAGTTCCAGTTGCTGTTTTGGTTAGGCTGCTTCGGTCTGGCTTAGAAAGCACAGTTGTTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGACGGAACTAGCGCTGAAGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTATTGGAGCTCCTAAGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTCTTAGAAGTTTTGCTTAACAATGTAAAGATCAGAGAAACAAAAGTTACCAAGTCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGCTATTAGCAACTTTGGCTCTTGGTGATCTATTTCAGAATGAGGGTCTTGCTCGGACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCGGGTGGGGTTCAGGTTATACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGATCTGTGAATGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATTTGGTTACGTCCTTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCCTTGAATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATACCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCTCGCTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGAACATTGGTGGTGATCATCAAGCGCGGTAACAACATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACACTCGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTACATGGTCCTTTGAGAGTCCTCCAAAAGGCCAAAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTAGTAATGCTAGGTGCAGTATCTGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGACCCTCGAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA
>Glyma18g02300.1 sequence type=predicted peptide gene model=Glyma18g02300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERNGDGKAQDSEPLPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDNLLTGALKNLSSSTERFWNATIQAGGVDILIKLLTTGQSSTLANVCFLLACMMMEDASVCSKLLTAETTKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTWASDPLVVEQTLLEQFKPHLPFLVQERTIEALASLYSNPILSIKLTNSDAKRLLVGLITMAANEVQEELLKSLLTLCNTECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESAEVVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIVTMIKLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENKDMAAIARDALPSLAALANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHSKRQVDYSVTDCVNRAGTVLALVSFLDFAIDEHSSTSEALEALAMLSRSDLTSAHSKPAWAVLAEFPKSIIPIVLSIADSTPVLQDKAIEILSRLCKDQPFVLGDTVVTASGCISSIAKRIINSTSKNVKVKIGGAAVLICAAKVNHQKLVEDLNLSNLCANLVQSLVDMLIFSQATLDNQGDDSREVISICRHTKEANDCKSSTGTALISSANLAIWLLSVLACHDEKSKIAIMEAGAIEVLTDRIADCFSQYSQIDYKEDSSMWICALLLAVLFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADSDIQDLLELSDEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLSIDCPSNKILMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAAHCVEPLVSLLVSEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNHVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTREEFGPDGQHSALQVLVNILEHPQCRADYTLTCHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQSDPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGSVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALNALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK*
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