Glyma18g02280 - SoyBase

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Report for Sequence Feature Glyma18g02280

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1430347
stop:	1434019
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g02280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10080	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr5:3150843-3153380 FORWARD LENGTH=528	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_G7J4D4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase-like protein n=1 Tax=Medicago truncatula RepID=G7J4D4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MYU8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MYU8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g02280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g02280 not represented in the dataset	Glyma18g02280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g02280

Paralog	Evidence	Comments
Glyma11g36160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g02280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g019400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g02280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g02280

Limit To All Plant Sequences

>Glyma18g02280.2   sequence type=transcript   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCCTTTCCCCATTAATTAAGCACTTAGTAACAGTCTAATTCCACCCGCAACAAAATGCGCTAGTTTTGTTTGTTTGTTTTATCCACCCTCACTCTCACTCTCACTCTCACTCACACACAGCCACACAGGGACGAAACGATACGATCCATGGCGATGATGATGCACACTGCGCACCCTCACCTCACTAATTAACACTAATCGTTACTTAAATCAGTTAAAACGAGGCATCAGAATAAGTGCAAGTGCCAGATCTCGATCTCGATGCGGTGGCGGTTGCTGCTTTTGTTGCTTTTGGTAACGGCTCGCGCAATGCCGGTTCCGATCACGTTTTCCGCCCGCCTCGTTCACCGCTTCGCCGACGAAATGAAACCGGTTCGGCCTCCGACCGGATACTGGCCGGACCGGTGGAGCATGGGCTACTACCGGATGCTTCTCACCGGCGACATTCTCCGGCGCAAGATCAAAGTCGGAGGCGCACGCTACCAGCTACTGTTTCCTTCTCACGGTAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTGCATTACACGTGGATTGATATAGGAACACCGAGCACTTCGTTTCTCGTGGCGTTGGACGCAGGGAGTGATCTCCTTTGGATTCCGTGTGATTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTGGAGTCATGTTGTGTTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGTGCAGGTTGATAGCGGGACATCATTTACTTTTCTTCCTGGTCATGTGTATGGAGCAATAGCTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCACGTTCCAACAGAATAACAGTTTTGTGGTCTATGACCCCGTATTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGAGATATGGGAACAATCGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTCCATCTCGGATGATTTCATCGTGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCCTTTACTGAGACAGACACGTTCTTATTCTTATGTATCTCAACTAGCCTGTCTAGATAGAGTTATTACATGTACATCCAAATATGTATCCATTTTGTCCTCCTCCTAGCTTTGTAAGTATTTTAGATCTTACACCATCCAATGCTGTTATTTTTTTGACATTGCCAGCATGTTAGATTCCTAACACGTACTGGACCATTATCTGTTAAACCCGCTTTTGCTCGGGTGAGGTTATGTAAATTAATATGCCTGGTGTTATCCCATGACTGCCTTTTAATTTAATTCATTTTTTCAGT

>Glyma18g02280.3   sequence type=transcript   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCCTTTCCCCATTAATTAAGCACTTAGTAACAGTCTAATTCCACCCGCAACAAAATGCGCTAGTTTTGTTTGTTTGTTTTATCCACCCTCACTCTCACTCTCACTCTCACTCACACACAGCCACACAGGGACGAAACGATACGATCCATGGCGATGATGATGCACACTGCGCACCCTCACCTCACTAATTAACACTAATCGTTACTTAAATCAGTTAAAACGAGGCATCAGAATAAGTGCAAGTGCCAGATCTCGATCTCGATGCGGTGGCGGTTGCTGCTTTTGTTGCTTTTGGTAACGGCTCGCGCAATGCCGGTTCCGATCACGTTTTCCGCCCGCCTCGTTCACCGCTTCGCCGACGAAATGAAACCGGTTCGGCCTCCGACCGGATACTGGCCGGACCGGTGGAGCATGGGCTACTACCGGATGCTTCTCACCGGCGACATTCTCCGGCGCAAGATCAAAGTCGGAGGCGCACGCTACCAGCTACTGTTTCCTTCTCACGGTAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTGCATTACACGTGGATTGATATAGGAACACCGAGCACTTCGTTTCTCGTGGCGTTGGACGCAGGGAGTGATCTCCTTTGGATTCCGTGTGATTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGTGCTCCTTCACATATGGGGCATCTATTATGCAGGATAGAGATCTGAATGAGTATAGTCCGTCTCGGTCCTTATCCAGTAAGCATCTATCTTGCAGTCATCAGTTGTGTGATAAGGGTTCGAATTGTAAAAGTTCACAGCAGCAGTGTCCATACATGGTCAGTTACTTGTCGGAGAACACGTCGAGTTCTGGATTGTTGGTTGAGGACATACTGCATCTTCAGTCAGGCGGCAGTTTATCAAACTCATCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTGGAGTCATGTTGTGTTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGTGCAGGTTGATAGCGGGACATCATTTACTTTTCTTCCTGGTCATGTGTATGGAGCAATAGCTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCACGTTCCAACAGAATAACAGTTTTGTGGTCTATGACCCCGTATTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGAGATATGGGAACAATCGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTCCATCTCGGATGATTTCATCGTGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCCTTTACTGAGACAGACACGTTCTTATTCTTATGTATCTCAACTAGCCTGTCTAGATAGAGTTATTACATGTACATCCAAATATGTATCCATTTTGTCCTCCTCCTAGCTTTGTAAGTATTTTAGATCTTACACCATCCAATGCTGTTATTTTTTTGACATTGCCAGCATGTTAGATTCCTAACACGTACTGGACCATTATCTGTTAAACCCGCTTTTGCTCGGGTGAGGTTATGTAAATTAATATGCCTGGTGTTATCCCATGACTGCCTTTTAATTTAATTCATTTTTTCAGT

Coding sequences of Glyma18g02280

Limit To All Plant Sequences

>Glyma18g02280.1   sequence type=CDS   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGTGGCGGTTGCTGCTTTTGTTGCTTTTGGTAACGGCTCGCGCAATGCCGGTTCCGATCACGTTTTCCGCCCGCCTCGTTCACCGCTTCGCCGACGAAATGAAACCGGTTCGGCCTCCGACCGGATACTGGCCGGACCGGTGGAGCATGGGCTACTACCGGATGCTTCTCACCGGCGACATTCTCCGGCGCAAGATCAAAGTCGGAGGCGCACGCTACCAGCTACTGTTTCCTTCTCACGGTAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTGCATTACACGTGGATTGATATAGGAACACCGAGCACTTCGTTTCTCGTGGCGTTGGACGCAGGGAGTGATCTCCTTTGGATTCCGTGTGATTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAGTATAGTCCGTCTCGGTCCTTATCCAGTAAGCATCTATCTTGCAGTCATCAGTTGTGTGATAAGGGTTCGAATTGTAAAAGTTCACAGCAGCAGTGTCCATACATGGTCAGTTACTTGTCGGAGAACACGTCGAGTTCTGGATTGTTGGTTGAGGACATACTGCATCTTCAGTCAGGCGGCAGTTTATCAAACTCATCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTGGAGTCATGTTGTGTTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGTGCAGGTTGATAGCGGGACATCATTTACTTTTCTTCCTGGTCATGTGTATGGAGCAATAGCTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCACGTTCCAACAGAATAACAGTTTTGTGGTCTATGACCCCGTATTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGAGATATGGGAACAATCGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTCCATCTCGGATGATTTCATCGTGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCCTTTACTGA

>Glyma18g02280.2   sequence type=CDS   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTGGAGTCATGTTGTGTTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGTGCAGGTTGATAGCGGGACATCATTTACTTTTCTTCCTGGTCATGTGTATGGAGCAATAGCTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCACGTTCCAACAGAATAACAGTTTTGTGGTCTATGACCCCGTATTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGAGATATGGGAACAATCGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTCCATCTCGGATGATTTCATCGTGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCCTTTACTGA

>Glyma18g02280.3   sequence type=CDS   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGATAGAGATCTGAATGAGTATAGTCCGTCTCGGTCCTTATCCAGTAAGCATCTATCTTGCAGTCATCAGTTGTGTGATAAGGGTTCGAATTGTAAAAGTTCACAGCAGCAGTGTCCATACATGGTCAGTTACTTGTCGGAGAACACGTCGAGTTCTGGATTGTTGGTTGAGGACATACTGCATCTTCAGTCAGGCGGCAGTTTATCAAACTCATCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTGGAGTCATGTTGTGTTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGTGCAGGTTGATAGCGGGACATCATTTACTTTTCTTCCTGGTCATGTGTATGGAGCAATAGCTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCACGTTCCAACAGAATAACAGTTTTGTGGTCTATGACCCCGTATTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGAGATATGGGAACAATCGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTCCATCTCGGATGATTTCATCGTGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCCTTTACTGA

Predicted protein sequences of Glyma18g02280

Limit To All Plant Sequences

>Glyma18g02280.1   sequence type=predicted peptide   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRWRLLLLLLLVTARAMPVPITFSARLVHRFADEMKPVRPPTGYWPDRWSMGYYRMLLTGDILRRKIKVGGARYQLLFPSHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHQLCDKGSNCKSSQQQCPYMVSYLSENTSSSGLLVEDILHLQSGGSLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHDSFSLCFNEDDSGRIFFGDQGPTIQQSTSFLPLDGLYSTYIIGVESCCVGNSCLKMTSFKVQVDSGTSFTFLPGHVYGAIAEEFDQQVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLTFQQNNSFVVYDPVFVFYGNEGVIGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRGNKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAAPSRMISSCRVHWHCYLFLLLLLVSALY*

>Glyma18g02280.2   sequence type=predicted peptide   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHDSFSLCFNEDDSGRIFFGDQGPTIQQSTSFLPLDGLYSTYIIGVESCCVGNSCLKMTSFKVQVDSGTSFTFLPGHVYGAIAEEFDQQVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLTFQQNNSFVVYDPVFVFYGNEGVIGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRGNKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAAPSRMISSCRVHWHCYLFLLLLLVSALY*

>Glyma18g02280.3   sequence type=predicted peptide   gene model=Glyma18g02280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQDRDLNEYSPSRSLSSKHLSCSHQLCDKGSNCKSSQQQCPYMVSYLSENTSSSGLLVEDILHLQSGGSLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHDSFSLCFNEDDSGRIFFGDQGPTIQQSTSFLPLDGLYSTYIIGVESCCVGNSCLKMTSFKVQVDSGTSFTFLPGHVYGAIAEEFDQQVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLTFQQNNSFVVYDPVFVFYGNEGVIGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRGNKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAAPSRMISSCRVHWHCYLFLLLLLVSALY*

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