Glyma18g02230 - SoyBase

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Report for Sequence Feature Glyma18g02230

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1391932
stop:	1399287
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g02230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10180	AT	Annotation by Michelle Graham. TAIR10: slufate transporter 2;1 \| chr5:3193225-3196818 FORWARD LENGTH=677	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0008272	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate transport	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008271	GO-mf	Annotation by Michelle Graham. GO Molecular Function: secondary active sulfate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015116	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfate transmembrane transporter activity	SoyBase	N/A	ISS
KOG0236	KOG	Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family)	JGI		ISS
PTHR11814	Panther	SULFATE TRANSPORTER	JGI		ISS
PTHR11814:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00916	PFAM	Sulfate transporter family	JGI		ISS
PF01740	PFAM	STAS domain	JGI		ISS
UniRef100_I1MYU2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MYU2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q02920	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Early nodulin-70 n=1 Tax=Glycine max RepID=NO70_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g02230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g02230 not represented in the dataset	Glyma18g02230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g02230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g018900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g02230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g02230

Limit To All Plant Sequences

>Glyma18g02230.1   sequence type=CDS   gene model=Glyma18g02230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTGGAGCTCTAGTAACTCAGAGGTGGTTGCTTCAAACAAAACCACGTTAGAAGAGGTTTTGGACATTGAGAACAACATGGCTCATCAGTGGGTGCTCAATGCTCCAGAGCCACCTTCCATGCTGCGTCAGGTGGTGGACAACGTCAAGGAAACCCTCTTACCGCATCCAAATCCAAACACATTCTCTTATCTCAGGAACCAACCCTTTTCCAAACGTGCCTTTGCCTTGTTGCAAAATTTGTTTCCCATTCTTGCTTCACTCCAAAACTACAATGCCCAAAAGCTCAAGTGCGATTTAATGGCCGGTCTAACCCTTGCAATCTTCGCTATTCCCCAGTGTATGGGAAATGCGACTTTGGCGCGGCTAAGTCCTGAATATGGCCTATATACAGGAATTGTCCCACCTCTTATTTATGCCATGCTGGCGAGTTCAAGGGAGATAGTGATCGGACCTGGATCCGTGGATTCACTGCTACTTTCCTCAATGATTCAAACATTGAAAGTTCCTATTCATGATTCTAGTACTTACATCCAACTTGTTTTCACTGTGACTTTTTTTGCGGGCATTTTTCAAGTTGCTTTCGGGCTCTTTAGGTTTGGTTTTCTGGTGGAATATCTTTCACAAGCCACGATCGTGGGGTTCTTGGCAGCAGCTGCCGTGGGCATTGGACTACAACAACTGAAAGGATTATTTGGGATCGATAATTTTAACAATAAAACTGATTTGTTTTCCGTGGTGAAATCTCTTTGGACATCGTTCAAAAACCAATCAGCATGGCATCCCTACAATTTAATTATTGGATTCTCATTTCTCTGTTTCATCCTATTTACCAGATTCCTGGGGAAAAGGAACAAGAAACTGATGTGGTTGTCACACGTTGCTCCTCTCCTTTCTGTTATTGGATCATCTGCTATTGCATACAAAATAAACTTTAATGAGCTTCAAGTGAAGGACTACAAAGTTGCAGTCTTGGGACCAATTAAAGGAGGCAGCTTGAATCCAAGTTCACTCCATCAGTTAACATTTGATAGCCAAGTTGTGGGTCATTTGATCAGAATAGGGTTGACGATTGCTATTATTTCACTCACGGGATCCATTGCTGTTGGCCGATCATTTGCATCTCTAAAAGGACACAGTATTGATCCCAATAGAGAAGTGGTATCATTGGGCATAATGAACATTGTTGGATCCTTAACTTCTTGCTATATTGCATCAGGGTCTTTGTCACGTACTGCTGTGAACTATAATGCTGGATCTGAAACCATGGTCTCCATCATAGTGATGGCACTTACGGTGCTCATGTCACTTAAATTTTTGACGGGGCTTTTATATTTCACTCCGAAAGCAATCCTTGCAGCAATAATTCTCTCGGCCGTACCAGGACTGATTGACCTTAACAAAGCACGTGAAATTTGGAAGGTTGATAAAATGGATTTCCTTGCTTGCACTGGAGCCTTTTTGGGAGTCTTGTTTGCATCTGTGGAAATAGGCCTTGCAATTGGGATCGCGATATCATTTGCGAAGATAATTATAACCTCTATTCAACCTGCTATAGCGGTTATTGGAAGGCTTCCAGGAACGGCTGCATTCGGCGATGTTGAACAATATCCAATGGCTGTCAACATTCCTGGGGTTTTGATAGTCTCTTTAAAATCTTCTTGGCTTTGTTTTGCAAATGCAAATCTTGTAGAGGAAAGGATTGAGAGATGGGTGAACAATGCAAAAGCTAAGGATGGCAAAGGAGGAGAAAACACCTTCATACACGTCATTATTGATGCCTCAAGTCTTACAAATATTGACACTGTGGGAATTGCTTCTCTGGTGGAGCTCAACAAAAATTTGATTTCCAGTGGAGTAAAGTTAGCTATCGCTAACCCTAGGTGGCATGTAATTCACAAGCTAAGATTAGCTAACTTCGTGAGCAAAATTGGAGGAAGGGTTTTCCTTTCTGTAGGAGAAGCAGTAGATGCATGTGTTGGCACTAAAATGGTTGCTGTATAA

Predicted protein sequences of Glyma18g02230

Limit To All Plant Sequences

>Glyma18g02230.1   sequence type=predicted peptide   gene model=Glyma18g02230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCWSSSNSEVVASNKTTLEEVLDIENNMAHQWVLNAPEPPSMLRQVVDNVKETLLPHPNPNTFSYLRNQPFSKRAFALLQNLFPILASLQNYNAQKLKCDLMAGLTLAIFAIPQCMGNATLARLSPEYGLYTGIVPPLIYAMLASSREIVIGPGSVDSLLLSSMIQTLKVPIHDSSTYIQLVFTVTFFAGIFQVAFGLFRFGFLVEYLSQATIVGFLAAAAVGIGLQQLKGLFGIDNFNNKTDLFSVVKSLWTSFKNQSAWHPYNLIIGFSFLCFILFTRFLGKRNKKLMWLSHVAPLLSVIGSSAIAYKINFNELQVKDYKVAVLGPIKGGSLNPSSLHQLTFDSQVVGHLIRIGLTIAIISLTGSIAVGRSFASLKGHSIDPNREVVSLGIMNIVGSLTSCYIASGSLSRTAVNYNAGSETMVSIIVMALTVLMSLKFLTGLLYFTPKAILAAIILSAVPGLIDLNKAREIWKVDKMDFLACTGAFLGVLFASVEIGLAIGIAISFAKIIITSIQPAIAVIGRLPGTAAFGDVEQYPMAVNIPGVLIVSLKSSWLCFANANLVEERIERWVNNAKAKDGKGGENTFIHVIIDASSLTNIDTVGIASLVELNKNLISSGVKLAIANPRWHVIHKLRLANFVSKIGGRVFLSVGEAVDACVGTKMVAV*

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