Glyma18g02160 - SoyBase

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Report for Sequence Feature Glyma18g02160

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1311712
stop:	1314904
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g02160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65140	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:26019878-26022077 REVERSE LENGTH=370	SoyBase	E_val: 0	ISS
GO:0005992	GO-bp	Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004805	GO-mf	Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity	SoyBase	N/A	ISS
PTHR10788	Panther	TREHALOSE-6-PHOSPHATE SYNTHASE	JGI		ISS
PF02358	PFAM	Trehalose-phosphatase	JGI		ISS
UniRef100_B9T4H6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9T4H6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MYT2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYT2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g02160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g02160

Paralog	Evidence	Comments
Glyma11g38230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g02160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g018100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g02160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g02160

Limit To All Plant Sequences

>Glyma18g02160.1   sequence type=CDS   gene model=Glyma18g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCAGCAGAATGTGGTAGTGTCTGATACTAAATCCGGAGTTTCCTTAACGGTTTTTCCAACAACAACACAAAAGCCACCGGCGGCGCCAGGAGGGTACATTTCCATTCCGAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGGCCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCCTCTCCTACCCATCATAAATCCACACCTTTGTCGCAGGAGCATAACTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGACCAAATTATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGCACGCTGTCTCCTATAGTCGACGACCCTGACCGTGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTCCCTACTGCTATAGTGACCGGCAGATGCAAAGACAAGGTTTACAATTTTGTTCGATTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGACCAACAAGAAGTTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATCCTTTGTCAACCTGCCAGTGATTTTCTTCCCTTGATAGATGAGGTGTATCAACAATTAGTTGAAAAGACAAAATCAACTCCTGGAGCTCTGGTTGAGAACAACAAGTTCTGTCTTTCAGTCCATTTTCGTTGCGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAGCTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTAGGTTTGGCCAATTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCGAAAGACACAAGTGCATCTTACTCTTTGCAAGAACCCAACGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCCCTGGGAGCACGTTCCCGAGTGTAA

Predicted protein sequences of Glyma18g02160

Limit To All Plant Sequences

>Glyma18g02160.1   sequence type=predicted peptide   gene model=Glyma18g02160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQQNVVVSDTKSGVSLTVFPTTTQKPPAAPGGYISIPRRRVLKNLEINGGQRINAWVESMRASSPTHHKSTPLSQEHNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILCQPASDFLPLIDEVYQQLVEKTKSTPGALVENNKFCLSVHFRCVDEKKWSELARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHVSLGARSRV*

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