SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G39860 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:18499909-18501472 FORWARD LENGTH=299 | SoyBase | E_val: 6.00E-132 | ISS |
| GO:0000280 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear division | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007000 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleolus organization | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1MYS4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MYS4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01JR1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: H0523F07.2 protein n=2 Tax=Oryza sativa RepID=Q01JR1_ORYSA | SoyBase | E_val: 3.00E-114 | ISS |
|
Glyma18g02080 not represented in the dataset |
Glyma18g02080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g38143 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g017400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g02080.2 sequence type=transcript gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCACTTTGACATTCACATTCAGAATGCAGAGAGGCACGCCAGTGAGAAAGCCACACACCAACACCTCCGATCTCCTCACTTGGTCGGAAACTCCTCCGCCAGAATCCGCCGCCACCGTCGCCTCCGCCACCCGCTCTGGCCAGGTTAGCATTGAAACAAACACTCTTTCATTCATTTCTCTCTTTTAACTCACACTGCATTCACATCGCAGCCTTCCGATAGAATCAGCAAGGTTCTCCATGGCGGCCAGCTCACCGACGAAGAAGCTCAGACGCTAGCCAAGAGGGTATAAAATGAAAGAAATGACTGGAAGTGGTATATTTTCTGCCAATGGGGAAGATTCTGCATCAGAAGCCAATTCTGCAAATTTGAATAACAGAACAAGCATACGCATGTGTCAGCAAGCGATGAATGGAATTAGTCAGATATCATTCAGCACCGACGAAAGCATTTCTCCTAAAAAGCCTACCTCAATACCTGAGGTAGCAAAGCAGCGTGAACTGAGTGGAACTATGCAAAGTGATTCGGACACAAAGAGTAAGAAGCAAATATCAAATGCCAAGACCAAGGAGCTCAGTGGAAATGACATATTTGGCCCTCCTCCTGAAATCCTGCCCCGTTCAGTTGCGGCTGCACGCACTTTGGAATCAAAGGAAAGTAAAGACATGGGAGAGCCTCTTCCCAGAAATCTGCGAACATCAGTGAAAGTTTCAAATCCTGCAGGTGGCCAAAGTAATATCTTATTTGGTGAAGCACCAGTTGAGAAGACGGCAAAGAAGATACATAACCAGAAGTTTGCGGAGCTGACAGGCAATAATATTTTCCAAGGAGATGTTCCTCCAGGCTCAGCAGAGAAGCCTCTGAGCAGGGCTAAGCTCAGAGAAATGACTGGCAGTGACATATTTGCTGATGGAAAGGCAGAAATCAAAGACCCTGTGCGAGGTGCCCGGAAACCCCCTGGTGGAGAGAGCAGCATTGCCTTGGTTTAAGTTAATTTTAACTTACAAAAATACTAGCAATATATTCTCTAATATATTTTTTCTGACATACTTTCTATTGATAGAAATTCGCGTGAGTCTTACTAAAAATGTGAGTCTCATCCACAAACAAGTGAAACTCACATGAATTTCAGTCAATGAAAGAAAGCAGATAAAAAAATGTATTGAAAAATGTGTTGTTAGCATTCTTCTTTAACTTATCCCCCTTTGACTTAGGCATTCTATAAATTCGTCTGAACTTCCATGTTTTTCAGTAGAAGGGTCAGTGTGTTCGATTATCAGCATTGTAGGTTTCAACTTTCAATGAGCGTGGCATAATCTTACTTTACATTTGAATGATGAAACATGAAATCGGCCCCTCTTGGACGAGGATTTTGTGTTCATTTATCCCTATTCGTACCGCTGCTAAAAATGTTACGAAAACTACAATTGTGTCATGTTTTGTTGAGTAGTTAAGAAGGGTGGGATTAGGCGATTATGTGATCTGATTACGAAGGGGCACTTCAAGTCTATTAGTGCAAGCAATGTGCTGCAAAGGACAATTTCTTTTGAGTTTATATTTCTTTTAGTGGCG >Glyma18g02080.3 sequence type=transcript gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAATTGTTAAGTTCCTTTTGTTTGAATAGTAAGAGAGTGAGATAACACGTTCTAATAAATTGCATTGGCCATCAAAGGACATGAGTGAAGCTCAAGCATAACGACGAAGGAGCGAGTTTCACAGTAGTGTCCAAACTCAAATGCAGAGAGGCACGCCAGTGAGAAAGCCACACACCAACACCTCCGATCTCCTCACTTGGTCGGAAACTCCTCCGCCAGAATCCGCCGCCACCGTCGCCTCCGCCACCCGCTCTGGCCAGCCTTCCGATAGAATCAGCAAGGTTCTCCATGGCGGCCAGCTCACCGACGAAGAAGCTCAGACGCTAGCCAAGAGCAAACCATGCTCAGGGTATAAAATGAAAGAAATGACTGGAAGTGGTATATTTTCTGCCAATGGGGAAGATTCTGCATCAGAAGCCAATTCTGCAAATTTGAATAACAGAACAAGCATACGCATGTGTCAGCAAGCGATGAATGGAATTAGTCAGATATCATTCAGCACCGACGAAAGCATTTCTCCTAAAAAGCCTACCTCAATACCTGAGGTAGCAAAGCAGCGTGAACTGAGTGGAACTATGCAAAGTGATTCGGACACAAAGAGTAAGAAGCAAATATCAAATGCCAAGACCAAGGAGCTCAGTGGAAATGACATATTTGGCCCTCCTCCTGAAATCCTGCCCCGTTCAGTTGCGGCTGCACGCACTTTGGAATCAAAGGAAAGTAAAGACATGGGAGAGCCTCTTCCCAGAAATCTGCGAACATCAGTGAAAGTTTCAAATCCTGCAGGTGGCCAAAGTAATATCTTATTTGGTGAAGCACCAGTTGAGAAGACGGCAAAGAAGATACATAACCAGAAGTTTGCGGAGCTGACAGGCAATAATATTTTCCAAGGAGATGTTCCTCCAGGCTCAGCAGAGAAGCCTCTGAGCAGGGCTAAGCTCAGAGAAATGACTGGCAGTGACATATTTGCTGATGGAAAGGCAGAAATCAAAGACCCTGTGCGAGGTGCCCGGAAACCCCCTGGTGGAGAGAGCAGCATTGCCTTGGTTTAAGTTAATTTTAACTTACAAAAATACTAGCAATATATTCTCTAATATATTTTTTCTGACATACTTTCTATTGATAGAAATTCGCGTGAGTCTTACTAAAAATGTGAGTCTCATCCACAAACAAGTGAAACTCACATGAATTTCAGTCAATGAAAGAAAGCAGATAAAAAAATGTATTGAAAAATGTGTTGTTAGCATTCTTCTTTAACTTATCCCCCTTTGACTTAGGCATTCTATAAATTCGTCTGAACTTCCATGTTTTTCAGTAGAAGGGTCAGTGTGTTCGATTATCAGCATTGTAGGTTTCAACTTTCAATGAGCGTGGCATAATCTTACTTTACATTTGAATGATGAAACATGAAATCGGCCCCTCTTGGACGAGGATTTTGTGTTCATTTATCCCTATTCGTACCGCTGCTAAAAATGTTACGAAAACTACAATTGTGTCATGTTTTGTTGAGTAGTTAAGAAGGGTGGGATTAGGCGATTATGTGATCTGATTACGAAGGGGCACTTCAAGTCTATTAGTGCAAGCAATGTGCTGCAAAGGACAATTTCTTTTGAGTTTATATTTCTTTTAGTGGCG
>Glyma18g02080.1 sequence type=CDS gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGAGGCACGCCAGTGAGAAAGCCACACACCAACACCTCCGATCTCCTCACTTGGTCGGAAACTCCTCCGCCAGAATCCGCCGCCACCGTCGCCTCCGCCACCCGCTCTGGCCAGCCTTCCGATAGAATCAGCAAGGTTCTCCATGGCGGCCAGCTCACCGACGAAGAAGCTCAGACGCTAGCCAAGAGCAAACCATGCTCAGGGTATAAAATGAAAGAAATGACTGGAAGTGGTATATTTTCTGCCAATGGGGAAGATTCTGCATCAGAAGCCAATTCTGCAAATTTGAATAACAGAACAAGCATACGCATGTGTCAGCAAGCGATGAATGGAATTAGTCAGATATCATTCAGCACCGACGAAAGCATTTCTCCTAAAAAGCCTACCTCAATACCTGAGGTAGCAAAGCAGCGTGAACTGAGTGGAACTATGCAAAGTGATTCGGACACAAAGAGTAAGAAGCAAATATCAAATGCCAAGACCAAGGAGCTCAGTGGAAATGACATATTTGGCCCTCCTCCTGAAATCCTGCCCCGTTCAGTTGCGGCTGCACGCACTTTGGAATCAAAGGAAAGTAAAGACATGGGAGAGCCTCTTCCCAGAAATCTGCGAACATCAGTGAAAGTTTCAAATCCTGCAGGTGGCCAAAGTAATATCTTATTTGGTGAAGCACCAGTTGAGAAGACGGCAAAGAAGATACATAACCAGAAGTTTGCGGAGCTGACAGGCAATAATATTTTCCAAGGAGATGTTCCTCCAGGCTCAGCAGAGAAGCCTCTGAGCAGGGCTAAGCTCAGAGAAATGACTGGCAGTGACATATTTGCTGATGGAAAGGCAGAAATCAAAGACCCTGTGCGAGGTGCCCGGAAACCCCCTGGTGGAGAGAGCAGCATTGCCTTGGTTTAA >Glyma18g02080.2 sequence type=CDS gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGAAATGACTGGAAGTGGTATATTTTCTGCCAATGGGGAAGATTCTGCATCAGAAGCCAATTCTGCAAATTTGAATAACAGAACAAGCATACGCATGTGTCAGCAAGCGATGAATGGAATTAGTCAGATATCATTCAGCACCGACGAAAGCATTTCTCCTAAAAAGCCTACCTCAATACCTGAGGTAGCAAAGCAGCGTGAACTGAGTGGAACTATGCAAAGTGATTCGGACACAAAGAGTAAGAAGCAAATATCAAATGCCAAGACCAAGGAGCTCAGTGGAAATGACATATTTGGCCCTCCTCCTGAAATCCTGCCCCGTTCAGTTGCGGCTGCACGCACTTTGGAATCAAAGGAAAGTAAAGACATGGGAGAGCCTCTTCCCAGAAATCTGCGAACATCAGTGAAAGTTTCAAATCCTGCAGGTGGCCAAAGTAATATCTTATTTGGTGAAGCACCAGTTGAGAAGACGGCAAAGAAGATACATAACCAGAAGTTTGCGGAGCTGACAGGCAATAATATTTTCCAAGGAGATGTTCCTCCAGGCTCAGCAGAGAAGCCTCTGAGCAGGGCTAAGCTCAGAGAAATGACTGGCAGTGACATATTTGCTGATGGAAAGGCAGAAATCAAAGACCCTGTGCGAGGTGCCCGGAAACCCCCTGGTGGAGAGAGCAGCATTGCCTTGGTTTAA >Glyma18g02080.3 sequence type=CDS gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGAGAGGCACGCCAGTGAGAAAGCCACACACCAACACCTCCGATCTCCTCACTTGGTCGGAAACTCCTCCGCCAGAATCCGCCGCCACCGTCGCCTCCGCCACCCGCTCTGGCCAGCCTTCCGATAGAATCAGCAAGGTTCTCCATGGCGGCCAGCTCACCGACGAAGAAGCTCAGACGCTAGCCAAGAGCAAACCATGCTCAGGGTATAAAATGAAAGAAATGACTGGAAGTGGTATATTTTCTGCCAATGGGGAAGATTCTGCATCAGAAGCCAATTCTGCAAATTTGAATAACAGAACAAGCATACGCATGTGTCAGCAAGCGATGAATGGAATTAGTCAGATATCATTCAGCACCGACGAAAGCATTTCTCCTAAAAAGCCTACCTCAATACCTGAGGTAGCAAAGCAGCGTGAACTGAGTGGAACTATGCAAAGTGATTCGGACACAAAGAGTAAGAAGCAAATATCAAATGCCAAGACCAAGGAGCTCAGTGGAAATGACATATTTGGCCCTCCTCCTGAAATCCTGCCCCGTTCAGTTGCGGCTGCACGCACTTTGGAATCAAAGGAAAGTAAAGACATGGGAGAGCCTCTTCCCAGAAATCTGCGAACATCAGTGAAAGTTTCAAATCCTGCAGGTGGCCAAAGTAATATCTTATTTGGTGAAGCACCAGTTGAGAAGACGGCAAAGAAGATACATAACCAGAAGTTTGCGGAGCTGACAGGCAATAATATTTTCCAAGGAGATGTTCCTCCAGGCTCAGCAGAGAAGCCTCTGAGCAGGGCTAAGCTCAGAGAAATGACTGGCAGTGACATATTTGCTGATGGAAAGGCAGAAATCAAAGACCCTGTGCGAGGTGCCCGGAAACCCCCTGGTGGAGAGAGCAGCATTGCCTTGGTTTAA
>Glyma18g02080.1 sequence type=predicted peptide gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQRGTPVRKPHTNTSDLLTWSETPPPESAATVASATRSGQPSDRISKVLHGGQLTDEEAQTLAKSKPCSGYKMKEMTGSGIFSANGEDSASEANSANLNNRTSIRMCQQAMNGISQISFSTDESISPKKPTSIPEVAKQRELSGTMQSDSDTKSKKQISNAKTKELSGNDIFGPPPEILPRSVAAARTLESKESKDMGEPLPRNLRTSVKVSNPAGGQSNILFGEAPVEKTAKKIHNQKFAELTGNNIFQGDVPPGSAEKPLSRAKLREMTGSDIFADGKAEIKDPVRGARKPPGGESSIALV* >Glyma18g02080.2 sequence type=predicted peptide gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEMTGSGIFSANGEDSASEANSANLNNRTSIRMCQQAMNGISQISFSTDESISPKKPTSIPEVAKQRELSGTMQSDSDTKSKKQISNAKTKELSGNDIFGPPPEILPRSVAAARTLESKESKDMGEPLPRNLRTSVKVSNPAGGQSNILFGEAPVEKTAKKIHNQKFAELTGNNIFQGDVPPGSAEKPLSRAKLREMTGSDIFADGKAEIKDPVRGARKPPGGESSIALV* >Glyma18g02080.3 sequence type=predicted peptide gene model=Glyma18g02080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQRGTPVRKPHTNTSDLLTWSETPPPESAATVASATRSGQPSDRISKVLHGGQLTDEEAQTLAKSKPCSGYKMKEMTGSGIFSANGEDSASEANSANLNNRTSIRMCQQAMNGISQISFSTDESISPKKPTSIPEVAKQRELSGTMQSDSDTKSKKQISNAKTKELSGNDIFGPPPEILPRSVAAARTLESKESKDMGEPLPRNLRTSVKVSNPAGGQSNILFGEAPVEKTAKKIHNQKFAELTGNNIFQGDVPPGSAEKPLSRAKLREMTGSDIFADGKAEIKDPVRGARKPPGGESSIALV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
