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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10320 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3244180-3246603 REVERSE LENGTH=403 | SoyBase | E_val: 5.00E-152 | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1MYQ5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYQ5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q4ABN8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 80A08_29 n=1 Tax=Brassica rapa subsp. pekinensis RepID=Q4ABN8_BRARP | SoyBase | E_val: 1.00E-148 | ISS |
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Glyma18g01920 not represented in the dataset |
Glyma18g01920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g38020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g015800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g01920.2 sequence type=transcript gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCAGGCCCAATTAAAGAGTTTTTCTGTTGAGGCAGAGTTGGGTGAGAGAAGGTTTTTTGTTCTCGGCCATGGAAGAATTACGGAAACTCGAGAAAGTACAGAGCATGCTTGAATTCATGGAATCACATTCACGGGGCGTTTCAAACTCCGATCAACACTCTAACCGCTTCCTCGCTAATTTCATTCTTTTCTTGATCGAACCCTGCGGAGACCTTTCCATCAACCACAAGTGCTCCTTGCTCTCCCACTTTATTCCCACTCTCTCATCTGCATTCCTCGAAGACGCGTATCAACACCACCTTTTCACCACCTCTAAACAACAAAATTCTGGTGGTTTTCAACAAAGTCTTGTTGGAAATTCTTTGCTTAGTTGCAATCAGATGAAAGAATACAGTTTGTTGCAAAGATGTAATGAAAACGCTGCCATGGTCGGGCTGGATTCCATGCAAATGGCAAATTCTACACTTGAGGATTTTATCTTATTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGCTAGATAAAATGAATGAGAAATTGCTGCAAACACCATGCAATGGAAATTGTGTATTTGGAGAAAAAGATGAGAGAGAAACTAAAGTATTGGTTTCTTGCTTCTCAAATGAGCCAGTTAGACCACTTGTTTCTATTCTTGAACACAAAGGCCTTTTGACAGAAAGGATAAGAGAAGAACTTAGACTTGGAGAAGAGTACTGGGCTCTTGAAAGAAAGCTCTGTTCTGCACTAACAAACAAAGAGGAGATTCTTGTTGAAGATGTGATGAAGGCTATTCATTTAAAGTCTTTTGATTATCGAGTGCTGAATCTTCTTCTCTATCAACTTCAAGGGACTAAGGTGGAGGAGTTGCATATGGAATTTCTCTCAATTTCGGAGTTCCTAGTGGAAGTTTCTGATGATCTGTATGATTATGAGGATGATGTTTTAGAGAACAATTTCAATATTTTGCGCATGTTTATCCGAATATATGGACCTTCAGCTGCCCCTGCTATGCTGGCGAAGTGCATTGGTGAGGCTGAAGACAAGTATGCAAGTTTACTGAAATCACTTGATCCACATCTCTCTCTGAGCTACCAGAAAAGATGTGCAGAAGCCACTAAAGAAGGTGGAAAGGTATCAGAGCACCCTCTTGGAACATGGAGTATTCCAACCGTGATTCAAGATGAGGAATTGTATAGATTAAAGTTGAAGTCAGATATTTCGTGAATATAACTTTTAACTGTGTCTCTGAGGTAATTCCTCCAGTATAACATGACGAGTTGGAGTTGAAATGTTGAATGACGCACTCATTAAAGGACTTACAAAAAGGGTGTGCCAGGCCCGTGCTATAGTGCAACGCATGTGCGCGACACATGAGAGTCCCAAGCTCCCTTTCAAAAAAGTAATTTAATTTTGACACACCAAGTAAAGCTGAACGGATATTTCTATAACTCATTCTGATTTTATCACTTGCCACCGATGATGTAAACTATAGTGTGTGTTTGGATTACCATTGGGAGCTTCCAAAATGGACATTCATACATTCCAAGGGACAAAACAAAAAAGCAACTATATTGTAGCTTTGGGCTGAACGTTGACAGCATGTTTGTTTCTCCGTTCCCAGCCTTCAAACTGTTTCAAAAATTATTTAATTTCCAAGACATAAATTATTTAATATAATAGT >Glyma18g01920.3 sequence type=transcript gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCAGGCCCAATTAAAGAGTTTTTCTGTTGAGGCAGAGTTGGGTGAGAGAAGGTTTTTTGTTCTCGGCCATGGAAGAATTACGGAAACTCGAGAAAGTACAGAGCATGCTTGAATTCATGGAATCACATTCACGGGGCGTTTCAAACTCCGATCAACACTCTAACCGCTTCCTCGCTAATTTCATTCTTTTCTTGATCGAACCCTGCGGAGACCTTTCCATCAACCACAAGTGCTCCTTGCTCTCCCACTTTATTCCCACTCTCTCATCTGCATTCCTCGAAGACGCGTATCAACACCACCTTTTCACCACCTCTAAACAACAAAATTCTGGTGGTACTGCACTGCTATTCTATCGCATTCATATTCACATGTCATTTACCGAATCGAATATTCTGTCTCGACAATCGCTCTTTATTTGGCTCCTGTTCAAAGAATAGATGCAACTATTGGTGGCATTGCCCAGCTTTGTTTTGCTGAGCTGAGAGAATTGTTTTCAACAAAGTCTTGTTGGAAATTCTTTGCTTAGTTGCAATCAGATGAAAGAATACAGTTTGTTGCAAAGATGTAATGAAAACGCTGCCATGGTCGGGCTGGATTCCATGCAAATGGCAAATTCTACACTTGAGGATTTTTGCAGATCTTATTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGCTAGATAAAATGAATGAGAAATTGCTGCAAACACCATGCAATGGAAATTGTGTATTTGGAGAAAAAGATGAGAGAGAAACTAAAGTATTGGTTTCTTGCTTCTCAAATGAGCCAGTTAGACCACTTGTTTCTATTCTTGAACACAAAGGCCTTTTGACAGAAAGGATAAGAGAAGAACTTAGACTTGGAGAAGAGTACTGGGCTCTTGAAAGAAAGCTCTGTTCTGCACTAACAAACAAAGAGGAGATTCTTGTTGAAGATGTGATGAAGGCTATTCATTTAAAGTCTTTTGATTATCGAGTGCTGAATCTTCTTCTCTATCAACTTCAAGGGACTAAGGTGGAGGAGTTGCATATGGAATTTCTCTCAATTTCGGAGTTCCTAGTGGAAGTTTCTGATGATCTGTATGATTATGAGGATGATGTTTTAGAGAACAATTTCAATATTTTGCGCATGTTTATCCGAATATATGGACCTTCAGCTGCCCCTGCTATGCTGGCGAAGTGCATTGGTGAGGCTGAAGACAAGTATGCAAGTTTACTGAAATCACTTGATCCACATCTCTCTCTGAGCTACCAGAAAAGATGTGCAGAAGCCACTAAAGAAGGTGGAAAGGTATCAGAGCACCCTCTTGGAACATGGAGTATTCCAACCGTGATTCAAGATGAGGAATTGTATAGATTAAAGTTGAAGTCAGATATTTCGTGAATATAACTTTTAACTGTGTCTCTGAGGTAATTCCTCCAGTATAACATGACGAGTTGGAGTTGAAATGTTGAATGACGCACTCATTAAAGGACTTACAAAAAGGGTGTGCCAGGCCCGTGCTATAGTGCAACGCATGTGCGCGACACATGAGAGTCCCAAGCTCCCTTTCAAAAAAGTAATTTAATTTTGACACACCAAGTAAAGCTGAACGGATATTTCTATAACTCATTCTGATTTTATCACTTGCCACCGATGATGTAAACTATAGTGTGTGTTTGGATTACCATTGGGAGCTTCCAAAATGGACATTCATACATTCCAAGGGACAAAACAAAAAAGCAACTATATTGTAGCTTTGGGCTGAACGTTGACAGCATGTTTGTTTCTCCGTTCCCAGCCTTCAAACTGTTTCAAAAATTATTTAATTTCCAAGACATAAATTATTTAATATAATAGT
>Glyma18g01920.1 sequence type=CDS gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAATTACGGAAACTCGAGAAAGTACAGAGCATGCTTGAATTCATGGAATCACATTCACGGGGCGTTTCAAACTCCGATCAACACTCTAACCGCTTCCTCGCTAATTTCATTCTTTTCTTGATCGAACCCTGCGGAGACCTTTCCATCAACCACAAGTGCTCCTTGCTCTCCCACTTTATTCCCACTCTCTCATCTGCATTCCTCGAAGACGCGTATCAACACCACCTTTTCACCACCTCTAAACAACAAAATTCTGGTGGTTTTCAACAAAGTCTTGTTGGAAATTCTTTGCTTAGTTGCAATCAGATGAAAGAATACAGTTTGTTGCAAAGATGTAATGAAAACGCTGCCATGGTCGGGCTGGATTCCATGCAAATGGCAAATTCTACACTTGAGGATTTTTGCAGATCTTATTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGCTAGATAAAATGAATGAGAAATTGCTGCAAACACCATGCAATGGAAATTGTGTATTTGGAGAAAAAGATGAGAGAGAAACTAAAGTATTGGTTTCTTGCTTCTCAAATGAGCCAGTTAGACCACTTGTTTCTATTCTTGAACACAAAGGCCTTTTGACAGAAAGGATAAGAGAAGAACTTAGACTTGGAGAAGAGTACTGGGCTCTTGAAAGAAAGCTCTGTTCTGCACTAACAAACAAAGAGGAGATTCTTGTTGAAGATGTGATGAAGGCTATTCATTTAAAGTCTTTTGATTATCGAGTGCTGAATCTTCTTCTCTATCAACTTCAAGGGACTAAGGTGGAGGAGTTGCATATGGAATTTCTCTCAATTTCGGAGTTCCTAGTGGAAGTTTCTGATGATCTGTATGATTATGAGGATGATGTTTTAGAGAACAATTTCAATATTTTGCGCATGTTTATCCGAATATATGGACCTTCAGCTGCCCCTGCTATGCTGGCGAAGTGCATTGGTGAGGCTGAAGACAAGTATGCAAGTTTACTGAAATCACTTGATCCACATCTCTCTCTGAGCTACCAGAAAAGATGTGCAGAAGCCACTAAAGAAGGTGGAAAGGTATCAGAGCACCCTCTTGGAACATGGAGTATTCCAACCGTGATTCAAGATGAGGAATTGTATAGATTAAAGTTGAAGTCAGATATTTCGTGA >Glyma18g01920.2 sequence type=CDS gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACGCTGCCATGGTCGGGCTGGATTCCATGCAAATGGCAAATTCTACACTTGAGGATTTTATCTTATTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGCTAGATAAAATGAATGAGAAATTGCTGCAAACACCATGCAATGGAAATTGTGTATTTGGAGAAAAAGATGAGAGAGAAACTAAAGTATTGGTTTCTTGCTTCTCAAATGAGCCAGTTAGACCACTTGTTTCTATTCTTGAACACAAAGGCCTTTTGACAGAAAGGATAAGAGAAGAACTTAGACTTGGAGAAGAGTACTGGGCTCTTGAAAGAAAGCTCTGTTCTGCACTAACAAACAAAGAGGAGATTCTTGTTGAAGATGTGATGAAGGCTATTCATTTAAAGTCTTTTGATTATCGAGTGCTGAATCTTCTTCTCTATCAACTTCAAGGGACTAAGGTGGAGGAGTTGCATATGGAATTTCTCTCAATTTCGGAGTTCCTAGTGGAAGTTTCTGATGATCTGTATGATTATGAGGATGATGTTTTAGAGAACAATTTCAATATTTTGCGCATGTTTATCCGAATATATGGACCTTCAGCTGCCCCTGCTATGCTGGCGAAGTGCATTGGTGAGGCTGAAGACAAGTATGCAAGTTTACTGAAATCACTTGATCCACATCTCTCTCTGAGCTACCAGAAAAGATGTGCAGAAGCCACTAAAGAAGGTGGAAAGGTATCAGAGCACCCTCTTGGAACATGGAGTATTCCAACCGTGATTCAAGATGAGGAATTGTATAGATTAAAGTTGAAGTCAGATATTTCGTGA >Glyma18g01920.3 sequence type=CDS gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGAATACAGTTTGTTGCAAAGATGTAATGAAAACGCTGCCATGGTCGGGCTGGATTCCATGCAAATGGCAAATTCTACACTTGAGGATTTTTGCAGATCTTATTTTATGTTTCACGGATTGGATGTAAGCAAGCCACAATCAATCTTCAAATACTTACCTATTCTTTCATTCACAGAGAGTTATATTTATCAGCTAGATAAAATGAATGAGAAATTGCTGCAAACACCATGCAATGGAAATTGTGTATTTGGAGAAAAAGATGAGAGAGAAACTAAAGTATTGGTTTCTTGCTTCTCAAATGAGCCAGTTAGACCACTTGTTTCTATTCTTGAACACAAAGGCCTTTTGACAGAAAGGATAAGAGAAGAACTTAGACTTGGAGAAGAGTACTGGGCTCTTGAAAGAAAGCTCTGTTCTGCACTAACAAACAAAGAGGAGATTCTTGTTGAAGATGTGATGAAGGCTATTCATTTAAAGTCTTTTGATTATCGAGTGCTGAATCTTCTTCTCTATCAACTTCAAGGGACTAAGGTGGAGGAGTTGCATATGGAATTTCTCTCAATTTCGGAGTTCCTAGTGGAAGTTTCTGATGATCTGTATGATTATGAGGATGATGTTTTAGAGAACAATTTCAATATTTTGCGCATGTTTATCCGAATATATGGACCTTCAGCTGCCCCTGCTATGCTGGCGAAGTGCATTGGTGAGGCTGAAGACAAGTATGCAAGTTTACTGAAATCACTTGATCCACATCTCTCTCTGAGCTACCAGAAAAGATGTGCAGAAGCCACTAAAGAAGGTGGAAAGGTATCAGAGCACCCTCTTGGAACATGGAGTATTCCAACCGTGATTCAAGATGAGGAATTGTATAGATTAAAGTTGAAGTCAGATATTTCGTGA
>Glyma18g01920.1 sequence type=predicted peptide gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEELRKLEKVQSMLEFMESHSRGVSNSDQHSNRFLANFILFLIEPCGDLSINHKCSLLSHFIPTLSSAFLEDAYQHHLFTTSKQQNSGGFQQSLVGNSLLSCNQMKEYSLLQRCNENAAMVGLDSMQMANSTLEDFCRSYFMFHGLDVSKPQSIFKYLPILSFTESYIYQLDKMNEKLLQTPCNGNCVFGEKDERETKVLVSCFSNEPVRPLVSILEHKGLLTERIREELRLGEEYWALERKLCSALTNKEEILVEDVMKAIHLKSFDYRVLNLLLYQLQGTKVEELHMEFLSISEFLVEVSDDLYDYEDDVLENNFNILRMFIRIYGPSAAPAMLAKCIGEAEDKYASLLKSLDPHLSLSYQKRCAEATKEGGKVSEHPLGTWSIPTVIQDEELYRLKLKSDIS* >Glyma18g01920.2 sequence type=predicted peptide gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTLPWSGWIPCKWQILHLRILSYFMFHGLDVSKPQSIFKYLPILSFTESYIYQLDKMNEKLLQTPCNGNCVFGEKDERETKVLVSCFSNEPVRPLVSILEHKGLLTERIREELRLGEEYWALERKLCSALTNKEEILVEDVMKAIHLKSFDYRVLNLLLYQLQGTKVEELHMEFLSISEFLVEVSDDLYDYEDDVLENNFNILRMFIRIYGPSAAPAMLAKCIGEAEDKYASLLKSLDPHLSLSYQKRCAEATKEGGKVSEHPLGTWSIPTVIQDEELYRLKLKSDIS* >Glyma18g01920.3 sequence type=predicted peptide gene model=Glyma18g01920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKEYSLLQRCNENAAMVGLDSMQMANSTLEDFCRSYFMFHGLDVSKPQSIFKYLPILSFTESYIYQLDKMNEKLLQTPCNGNCVFGEKDERETKVLVSCFSNEPVRPLVSILEHKGLLTERIREELRLGEEYWALERKLCSALTNKEEILVEDVMKAIHLKSFDYRVLNLLLYQLQGTKVEELHMEFLSISEFLVEVSDDLYDYEDDVLENNFNILRMFIRIYGPSAAPAMLAKCIGEAEDKYASLLKSLDPHLSLSYQKRCAEATKEGGKVSEHPLGTWSIPTVIQDEELYRLKLKSDIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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