Glyma18g01820 - SoyBase

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Report for Sequence Feature Glyma18g01820

Feature Type:	gene_model
Chromosome:	Gm18
Start:	1022409
stop:	1029156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g01820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10370	AT	Annotation by Michelle Graham. TAIR10: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related \| chr5:3261245-3267188 FORWARD LENGTH=1775	SoyBase	E_val: 0	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0922	KOG	DEAH-box RNA helicase	JGI		ISS
PTHR18934	Panther	ATP-DEPENDENT RNA HELICASE	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF01485	PFAM	IBR domain	JGI		ISS
PF04408	PFAM	Helicase associated domain (HA2)	JGI		ISS
PF07717	PFAM	Domain of unknown function (DUF1605)	JGI		ISS
UniRef100_G7J375	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein n=1 Tax=Medicago truncatula RepID=G7J375_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LNH6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNH6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g01820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g01820

Paralog	Evidence	Comments
Glyma11g37910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g01820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g014800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g01820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g01820

Limit To All Plant Sequences

>Glyma18g01820.1   sequence type=CDS   gene model=Glyma18g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAATCCTCCTACCCTAATCCCACCCCTCGCCGCCACGATTTTCACCGTCCGCCACCACCCACCCACGGCTGCGGTTGGGCTCCCCGCCCCGCCTACCACCGCCCCTACCACCAATGGAGGCCCCGATTCCACCCCCACGCCGCCCGCATCGACCGCCCTCCGGAGCCCTATTTCAGGGTGGAGCTCCGCCTCGGCAGCAGCCCCCTCCACCGCGACGACGTCGAGGCCCTGATCGACGAATGCCACTCCCGGCACGACACCTTCACTTTCTACCCCGTCGACGACGTCGCCGCCGTTCTCAGTTACCGGAGCTGGGAGCAGGCGCGAGACGCCGTCGTTTGGTTCTGGGAGGCGCGGCTCGCGGAGAAGCACGATTTCACGCCGACGCTGGATTCCAACGTCGTCGTCGTCAAGGACGATGTGGATTGTCGCCTTCGACCGGTGTTCGCGAGGCACGTGAAAGGGTTGACGGAAGGGAAGGAGGTGAAGCGGTGGATGGAGGAGAGTGAACGGTTGTCGAAAGAAATTTCTCGGCTTTCGAGTTCGCTGAGTAAGCCCTTGCGACTTGGCGTGCACAACGAGTTGGTGGAGAAGAAGAAAGGGCTTGTTGATGAGAAGAATCTTGTTGAAAGGAGGTTGAAGGAGTTTGAGTCTGCGATGCAGTGTTTATTGAAGTATTTGGAGGGTGGTGTTGACGTGGAGGGTGTGACTGTCTTTAGGTTTGATGGAGGTTTTGATTGGAAGCGGATTCATTGTCTGATCAAAAGGGAGTGTCGGAGGCTTGAGGACGGGTTGCCTATTTATGCTTACCGGAGTGATATTCTTCAGGAAATACATTATCAACAGATAATGGTATTAATCGGAGAGACTGGTTCTGGGAAGAGTACGCAGTTGGTACAGTTTCTTGCTGATTCAGGCATTGGTACTGACGAATCCATTGTGTGCACCCAACCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCATTGGATGTTATGAAGGCCAATCAATCAAATGCTGTTCTACATTTTCATCCTCACGTGAGTTTGATTCCAGGATAGCATTCATGACAGATCATTGTTTATTGCAGCACTACATGAGTGATAATAATTTATCCGGGGTCTCGTGCATCATAATTGATGAGGCTCATGAGAGGAGCTTAAATACAGATTTACTGTTGACTTTGTTAAAGAGTTTACTTTGTAGGAGGGTTGAAATGAGACTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTGTCTGATTACTTTTTTGCTTGTGGAATTTTTCGTGTGCTTGGGAGAAGCTTTCCAGTGGATATCAAATATGTTCCTTCTGACTATGCAGGAGATTCTGGTTCTGCTGTTGTTGCCTCATATGTTTCTGATGTTGTCAGAATGGCAACTGAGGTTCACAAAACTGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCTCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTCAAGCTCCCTCTGCAGTAGCTTTGCCCTTGCATGGAAAACTTTCTTCTGATGAGCAATTCCGTGTTTTTCAGAACTACACTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCACTTACGATTCCTGGTGTTAGGTATGTGATAGATTCTGGGCTGGTTAAAGACAGCAGATTTGATCCTGGTAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGACTGTACACGGAAGCTGATTATCAGTCTATGGACCTAAATCAAGAGCCGGAGATTCGGAGAGTTCATCTTGGTGTAGCAGTTCTGAGGATCCTTGCTTTAGGAGTGAAGGATGTGCAAGGTTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCCATAGATATGGCAATCAGAAATCTAATTCAATTAGGAGCCATTGAACTGAACAATGATGTTCATGATTTAACTTCTGAAGGTTGGTGCTTGGTAAGAATGGGAATTGAACCTAGGCTGGGTAAACTTATTCTTGGTTGTTTCAAACATGGTTTGGGTAGGGAAGGTATCATCCTTGCTGCTGTGATGGCCAATGCTAGTAGCATCTTTTGCAGAGTTGGCAATGAATTTGATAAACAAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCTCCGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAAAGGAAGAACAAATGGTGTTGGGAAAACAGTATCAATGCCAAATCCATGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACATGACGTTGTTACTCCGAGTTACTGGCGTTGGGACCCTTGTATGCCCTCTAATCATGATAAGAATTTGAAAAGGGTAATACTGTTCTCACTTGCTGAGAATGTAGCCATGTACTCCGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCAAGTTGGGTAGTTTTTGGTGAGCTTCTTTCCATTTCCAATCAATATTTGGTCTGTGTGAGTGCATTTGATTTTCAATCATTATACGACCTTTGCCCTGCTCCCCTGTTTGATGTATCCAAAATGGAAGAGCGGAAGTTGCTAATGAAGACACTGTCTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAACTGCAATTTGCTTGCTCTTGTTTCACGTATAAGGAAAGCTTGTATGGATGAACGCATCTTCATCGAAGTGAATGTTGACAATAATGAAATCCACTTATATGCCTCTTCAAATGATATGGATATAGCCCTTGGGTTGGTTAACGATGTTCTAGAATATGAGAGAAAGTGGTTACGCACTGAATGTATGGATAAGTTTTTGTATCATGGTTCTGGTTTCTCTCCACCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGTGTCATCCAAACATAAATGAAATTGATGACAAGGAGCTCTTGATGTTTTTTGAGAAGAATACCTCTGGTTGCATCTGTGCTGTGCACAAATTCACAGGCAATACGAGGGATGAAGATAGGGATAAGTGGGGCAGGATAACATTTATGTCCCCAGATATTGTCAGAAGAGCTGCTGAGCTAGATGGACGGGAGTTTTGTGGCTCATCCTTAAAAGTTGTTCCTTCACAGTTGGGAGGGGATAAAACATTTTCGTTCCCTGCTGTTAAAGCAAGAATTTCTTGGCCTCGTAGGCTTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAGGACGTTGATTATATCTTGAGAGATTTCTATAACCTTGCAGTAGGAGGGAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTTATAAATGGGCTTGACAAAGAGCTTTCGGAAGCTGAAATATCAGATGTGCTAAGAACTGCTACAACTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGAAGCAGTTGGAAATCCACCATGCAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTACCCCTTTTTGCCCAAAAGGAACCCTCACATTAGTCCTTGCCGAGTTCAGGTGTTTGCACCTGAGCCCAAGGATGCTTTCATGAGAGCTTTAATCACTTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAAAGGTGTTACCTGGATGTCTTTCATGGCAAAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCCCTTACATTTCCTACTCCAGTGTATCGTGTGATTAAGGAACAACTGGATGAAGTACTTGCAAGCTTCAGGAATTTGAAAGGTCTTGAATGCAACCTGGACAGGACATTTAATGGTTCTCACCGAGTGAAGATAACAGCGAACGCCACAAGGACAGTGGCAGAAGTTAGAAGACCTCTGGAAGAACTATTGAGAGGGAAAACCATTGAGCATGACAGCCTCACCCCTGCAGTTCTCCAACTCATGTTGTCCAGAGATGGCTTTAGTCTTAAAAACTCATTGCAGCAAGAGACTGGAACTTATATTCTTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCCCCAAACATGGTTGCTTTGGCTCAGGAGAAGGTGATACAGTCCCTCCTTTCTCTCCATGAAGAAAAGCAGTTAGAAATTCATCTGAGAGGGAGGGATCTACCTCCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTCCATGGATTGAAAGAGAGGGTACCTGGGGTAGATCTTACACTGAACATACGTCGCCACATAATCATTCTTCATGGTAGCAAGGAGTTGAAACCGAGAGTAGAGGAAATAGTTTTTGAGATTGCTCGTTCAAGCCATCATTTGGTTGAGAGATTTGGCAATGGACCCAGTTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGATACCGGCTTGAAGGCTGTGGCCATTTGTTCTGCCGGATGTGTTTGGTTGAGCAATTTGAATCTGCTATTAAAAACCAAGGCACTTTCCCGGTATGTTGTACTCACAGGGACTGTGGAGATCCCATCCTGCTTACAGATTTGAGATCTCTTTTATTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCAACAAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGTCTGCTGGCGAGCCATTTGTTTGTAGGGCTTGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGTGAGAGATACAAAGAATTCAAGGAAGATCCGGATTCATCTCTGATAGAATGGTGCAGAGGGAAAGAACAAGTTAAGTGCTGCTCGGCATGTGGATATGTAATTGAGAAGGTAGATGGGTGCAACCACGTTGAATGCAAGTGCGGAAAGCATGTCTGCTGGGTTTGTTTAGAGTTCTTTAGTACTAGTAATGACTGTTATGACCATTTAAGAACTATACACTTAACCATATAA

Predicted protein sequences of Glyma18g01820

Limit To All Plant Sequences

>Glyma18g01820.1   sequence type=predicted peptide   gene model=Glyma18g01820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSSYPNPTPRRHDFHRPPPPTHGCGWAPRPAYHRPYHQWRPRFHPHAARIDRPPEPYFRVELRLGSSPLHRDDVEALIDECHSRHDTFTFYPVDDVAAVLSYRSWEQARDAVVWFWEARLAEKHDFTPTLDSNVVVVKDDVDCRLRPVFARHVKGLTEGKEVKRWMEESERLSKEISRLSSSLSKPLRLGVHNELVEKKKGLVDEKNLVERRLKEFESAMQCLLKYLEGGVDVEGVTVFRFDGGFDWKRIHCLIKRECRRLEDGLPIYAYRSDILQEIHYQQIMVLIGETGSGKSTQLVQFLADSGIGTDESIVCTQPRKIAAKSVAQRVQEESIGCYEGQSIKCCSTFSSSREFDSRIAFMTDHCLLQHYMSDNNLSGVSCIIIDEAHERSLNTDLLLTLLKSLLCRRVEMRLIIMSATADAKQLSDYFFACGIFRVLGRSFPVDIKYVPSDYAGDSGSAVVASYVSDVVRMATEVHKTEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSSDEQFRVFQNYTGKRKVIFSTNLAETSLTIPGVRYVIDSGLVKDSRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYTEADYQSMDLNQEPEIRRVHLGVAVLRILALGVKDVQGFDFVDAPSPSSIDMAIRNLIQLGAIELNNDVHDLTSEGWCLVRMGIEPRLGKLILGCFKHGLGREGIILAAVMANASSIFCRVGNEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSMRRCQDTILELETCLEREHDVVTPSYWRWDPCMPSNHDKNLKRVILFSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSAFDFQSLYDLCPAPLFDVSKMEERKLLMKTLSGLGCILLKRFCGKANCNLLALVSRIRKACMDERIFIEVNVDNNEIHLYASSNDMDIALGLVNDVLEYERKWLRTECMDKFLYHGSGFSPPVALFGSGAEIKHLELEKRSLSVDVCHPNINEIDDKELLMFFEKNTSGCICAVHKFTGNTRDEDRDKWGRITFMSPDIVRRAAELDGREFCGSSLKVVPSQLGGDKTFSFPAVKARISWPRRLSRGFAIVKCDIKDVDYILRDFYNLAVGGRYVRCEVGKKSMDSVVINGLDKELSEAEISDVLRTATTRRILDFFLVRGEAVGNPPCSALEEALLKEIYPFLPKRNPHISPCRVQVFAPEPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPTPVYRVIKEQLDEVLASFRNLKGLECNLDRTFNGSHRVKITANATRTVAEVRRPLEELLRGKTIEHDSLTPAVLQLMLSRDGFSLKNSLQQETGTYILFDRHNLNLRVFGSPNMVALAQEKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQMIKNFGPDLHGLKERVPGVDLTLNIRRHIIILHGSKELKPRVEEIVFEIARSSHHLVERFGNGPSCPICLCEVEDGYRLEGCGHLFCRMCLVEQFESAIKNQGTFPVCCTHRDCGDPILLTDLRSLLFGDKLEDLFRASLGAFVATSGGTYRFCPSPDCPSIYRVADPGSAGEPFVCRACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLIEWCRGKEQVKCCSACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSTSNDCYDHLRTIHLTI*

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