Glyma18g01570 - SoyBase

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Report for Sequence Feature Glyma18g01570

Feature Type:	gene_model
Chromosome:	Gm18
Start:	867982
stop:	870277
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g01570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67750	AT	Annotation by Michelle Graham. TAIR10: Pectate lyase family protein \| chr1:25401660-25403165 FORWARD LENGTH=408	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0030570	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity	SoyBase	N/A	ISS
PF00544	PFAM	Pectate lyase	JGI		ISS
UniRef100_H2DL22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulation pectate lyase n=2 Tax=Lotus japonicus RepID=H2DL22_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DFE3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFE3 related cluster n=1 Tax=unknown RepID=UPI000233DFE3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g01570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g01570

Paralog	Evidence	Comments
Glyma11g37620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g01570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g012300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g01570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g01570

Limit To All Plant Sequences

>Glyma18g01570.2   sequence type=CDS   gene model=Glyma18g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTTCATTCACATTTATGTTCCAGTTCTTGCTTCTTGCCCCATCTGTGATCTATGCTTCTCCAGTTCAAGACCCTGAATTAGTGATCCAGGAAGTTCAAAAGAGCATCAATGGCTCAAGGAGAAACTTGGGGTATCTTTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCCAACTGGGAAAGGAACCGAAAGCGTCTAGCTAGTTGTGCAATTGGGTTTGGTAAGCATGCCATTGGTGGAAAAGATGGGAAAATATATGTGGTGACTGACCCTAGTGATAACCCTGTGAACCCCAAGCCAGGAACATTGAGACATGGTGTTATTCAACAAGAGCCTTTGTGGATCATTTTCAAGCATGACATGGTGATCAAGCTACACAAGGATCTCTTAGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACCATCCACATTGCTGGAGGAGGGCCATGCATTAGAGTGCAAAAGAAGACCAATATCATAATTCATGGCATACACATCCATGATTGCAAAAGGGGTGGGGTGGATATTGCAAGATCAGACGGTGACGGGATCACAATCTTTGGTGGGAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTCATTGATGTTGTTCATGGCTCAACGGCCATCACCATTTCCAACAATAACATGACACACCATAACAAGGTCATGCTCTTGGGCCACAGTGATTCCTATAAAGCTGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTTGGAGTAGGACTAGGGGGAAGAATGCCGAGATGCAGGTTTGGATACTTTCATGTGGTGAACAATGATTACACAAATTGGCAACATTATGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTCGTGCTCCAAATGATGAAGACCACAAAGAGGTGACCAAACATTTTAAATCATCAAAGAGTGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGCTGAATGGTGCCTTCTTCACAGCTTCCGGGGCGGGGGCAACTGCTAGGTATGATAAAGCGTCAAGCATGGCAGCACGACCACCTATGCTTGTGGTTTCCATGACAGCAGGGGCTGGAGCACTTAGATGCAACAAGGGCAATCTATGCCACTAG

Predicted protein sequences of Glyma18g01570

Limit To All Plant Sequences

>Glyma18g01570.2   sequence type=predicted peptide   gene model=Glyma18g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFSFTFMFQFLLLAPSVIYASPVQDPELVIQEVQKSINGSRRNLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCAIGFGKHAIGGKDGKIYVVTDPSDNPVNPKPGTLRHGVIQQEPLWIIFKHDMVIKLHKDLLVNSYKTIDGRGATIHIAGGGPCIRVQKKTNIIIHGIHIHDCKRGGVDIARSDGDGITIFGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNNMTHHNKVMLLGHSDSYKADKNMQVTIAFNHFGVGLGGRMPRCRFGYFHVVNNDYTNWQHYAIGGSSSPTIFSQGNRFRAPNDEDHKEVTKHFKSSKSEWRKWNWRSEGDLMLNGAFFTASGAGATARYDKASSMAARPPMLVVSMTAGAGALRCNKGNLCH*

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