Glyma18g01180 - SoyBase

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Report for Sequence Feature Glyma18g01180

Feature Type:	gene_model
Chromosome:	Gm18
Start:	600381
stop:	605699
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g01180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24330	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:8631779-8634835 FORWARD LENGTH=771	SoyBase	E_val: 0	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005871	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0019894	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinesin binding	SoyBase	N/A	ISS
PTHR22849	Panther	WDSAM1 PROTEIN	JGI		ISS
PF04564	PFAM	U-box domain	JGI		ISS
PF05804	PFAM	Kinesin-associated protein (KAP)	JGI		ISS
UniRef100_G7JC16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JC16_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MYH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYH3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g01180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g01180 not represented in the dataset	Glyma18g01180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g01180

Paralog	Evidence	Comments
Glyma11g37220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g01180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g008300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g01180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g01180

Limit To All Plant Sequences

>Glyma18g01180.3   sequence type=transcript   gene model=Glyma18g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATAAACTGCCACTATTTGTTACCGTTCACGGACACAGCACAGCGAAGGAAAATAGCGATTTCTCTCACATTTGCTCTTTCTTTCCCTTTTTCCCCTCTGTCCTCGTGCGCTTCCTCCCAACAATTCGCTCTTCGGTTTGGACCTCAATACCTGTCTCTGAATAAAACAACTAAACTCACAGATCTTCTTCCCAACCCTCATTTTTTTTTCCCGAAGCGGCGTTTTTATTGGCCATAAATCACATGATTCATTTCATTGCATTTCTTCTCTCATCTTCTCCTCCTGGTTAGTTAGCACCTAAGAATACAGACTGAATGCGAATAATGGATGTTGCTGAGGTTGAAGAAAGTTTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTGTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTTGGGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGACGAAATTGTGAAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGATAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTTTCTGATGACAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCCAGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCGCCAGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCTTTATCAGACACTGAATCCACAAATTCAAGATCCGTAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGAAATGCTACTGAAAGTTTTTGTGCGCAAGAGGAAGATAATGAACAGTATGTTAGTTTTCTTAAAGTCTTGACAGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCCAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCATGAAGCGAATGCGATGGCTCTTGAAATTGGTGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAATAGAAATAAGGAAATTATGATATCAACAGGAATCTTGTCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTACGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTCGATAAAGCCAAGCATATGATTGGCACAAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTGAAGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCAAATATTCCAAACCTCCTTTCGTCTGGCATCATGGATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTATCAAGCAGGAAGAGAGAAAATGATGTTGGCTCCTGGACTTATAAGTGCCTTGGCTTCCACACTAGATACCGGTGAGCCCATAGAGCAGGAACAAGCTGCTTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTCAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCGAGAGGAAGAGAGAAGGCTCAGAAGCTCTTGATGGTCTTCAGAGAGCAGCGACAACGAGACCATTCTCCTGTTAAGATTGATCAACCTGAATCCGAAAGTAGTGATTTGTCTATGCCTCCTCCTGACACCAAACCGCTATCTAAAACAATATCTAGAAGAAAGGTGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAAGTTTCATGTAAATTTCTGTTTGATTCTTAACTTTTCTGGCCCTGCTTTTCACTCTCTCACCCGTTCTTTCGGGTGCTGCTTACTTTTTGGTTCCCAAAGAAGAGATGTACAGTCATATGTAATTTATGGATGTTTTTTACCTGTCCCTTCCCTCTTTGTATATCAATCTCTCATAAATGTTTTTGTTCGTTTTTTGGGTGGGGGAGGGGTGTTTTCATTTCTACGAGCTTCATGTGTTAGATTTCCCTTATGAAGGTTGAGGTAAATGTGAAGTCTGTTGCATGTTACTCGGCTTGTAGTGTGCCAGCTGCAAGGTATCTTTTGA

Coding sequences of Glyma18g01180

Limit To All Plant Sequences

>Glyma18g01180.2   sequence type=CDS   gene model=Glyma18g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAATAATGGATGTTGCTGAGGTTGAAGAAAGTTTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTGTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTTGGGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGACGAAATTGTGAAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGATAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTTTCTGATGACAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCCAGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCGCCAGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCTTTATCAGACACTGAATCCACAAATTCAAGATCCGTAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGAAATGCTACTGAAAGTTTTTGTGCGCAAGAGGAAGATAATGAACAGTATGTTAGTTTTCTTAAAGTCTTGACAGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCCAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCATGAAGCGAATGCGATGGCTCTTGAAATTGGTGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAATAGAAATAAGGAAATTATGATATCAACAGGAATCTTGTCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTACGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTCGATAAAGCCAAGCATATGATTGGCACAAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTGAAGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCAAATATTCCAAACCTCCTTTCGTCTGGCATCATGGATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTATCAAGCAGGAAGAGAGAAAATGATGTTGGCTCCTGGACTTATAAGTGCCTTGGCTTCCACACTAGATACCGGTGAGCCCATAGAGCAGGAACAAGCTGCTTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTCAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCGAGAGGAAGAGAGAAGGCTCAGAAGCTCTTGATGGTCTTCAGAGAGCAGCGACAACGAGACCATTCTCCTGTTAAGATTGATCAACCTGAATCCGAAAGTAGTGATTTGTCTATGCCTCCTCCTGACACCAAACCGCTATCTAAAACAATATCTAGAAGAAAGGTGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA

>Glyma18g01180.3   sequence type=CDS   gene model=Glyma18g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAATAATGGATGTTGCTGAGGTTGAAGAAAGTTTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTGTCTGCAATATACTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTTGGGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGACGAAATTGTGAAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGATAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTTTCTGATGACAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCCAGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCGCCAGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCTTTATCAGACACTGAATCCACAAATTCAAGATCCGTAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGAAATGCTACTGAAAGTTTTTGTGCGCAAGAGGAAGATAATGAACAGTATGTTAGTTTTCTTAAAGTCTTGACAGAAGGGAACAATTGGAAGAGGAAGTGTAAAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCCAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCATGAAGCGAATGCGATGGCTCTTGAAATTGGTGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAATAGAAATAAGGAAATTATGATATCAACAGGAATCTTGTCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTACGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTCGATAAAGCCAAGCATATGATTGGCACAAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTGAAGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCAAATATTCCAAACCTCCTTTCGTCTGGCATCATGGATGGCCTACAATCCCTTCTTGTAGACCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTATCAAGCAGGAAGAGAGAAAATGATGTTGGCTCCTGGACTTATAAGTGCCTTGGCTTCCACACTAGATACCGGTGAGCCCATAGAGCAGGAACAAGCTGCTTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTCAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTGAATGGGACCTCGAGAGGAAGAGAGAAGGCTCAGAAGCTCTTGATGGTCTTCAGAGAGCAGCGACAACGAGACCATTCTCCTGTTAAGATTGATCAACCTGAATCCGAAAGTAGTGATTTGTCTATGCCTCCTCCTGACACCAAACCGCTATCTAAAACAATATCTAGAAGAAAGGTGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA

Predicted protein sequences of Glyma18g01180

Limit To All Plant Sequences

>Glyma18g01180.2   sequence type=predicted peptide   gene model=Glyma18g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIMDVAEVEESFFAASDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALGDSLKRVEDIVPQSIGCQIDEIVKELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPSGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVGSCKLKGVKVVPVEESGISEQMGGNATESFCAQEEDNEQYVSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQSAVHEANAMALEIGAMALFNLAVNNNRNKEIMISTGILSLLEEMISKTSSYGCAVALYLNLSCLDKAKHMIGTSQAVQFLIQILEAKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIMDGLQSLLVDQGDCMWTEKCIAVLINLAVYQAGREKMMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCQMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQRDHSPVKIDQPESESSDLSMPPPDTKPLSKTISRRKVVGKAFSFLWKSKSYSVYQC*

>Glyma18g01180.3   sequence type=predicted peptide   gene model=Glyma18g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIMDVAEVEESFFAASDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALGDSLKRVEDIVPQSIGCQIDEIVKELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPSGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVGSCKLKGVKVVPVEESGISEQMGGNATESFCAQEEDNEQYVSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLQSAVHEANAMALEIGAMALFNLAVNNNRNKEIMISTGILSLLEEMISKTSSYGCAVALYLNLSCLDKAKHMIGTSQAVQFLIQILEAKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIMDGLQSLLVDQGDCMWTEKCIAVLINLAVYQAGREKMMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCQMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQRDHSPVKIDQPESESSDLSMPPPDTKPLSKTISRRKVVGKAFSFLWKSKSYSVYQC*

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