Glyma18g01040 - SoyBase

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Report for Sequence Feature Glyma18g01040

Feature Type:	gene_model
Chromosome:	Gm18
Start:	513587
stop:	514524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g01040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43250	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit C13 \| chr5:17356174-17356566 REVERSE LENGTH=130	SoyBase	E_val: 2.00E-46	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR10252	Panther	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	JGI		ISS
PF00808	PFAM	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	JGI		ISS
UniRef100_G7JC00	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit C-4 n=1 Tax=Medicago truncatula RepID=G7JC00_MEDTR	SoyBase	E_val: 3.00E-50	ISS
UniRef100_I1MYF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYF9_SOYBN	SoyBase	E_val: 1.00E-111	ISS

Expression Patterns of Glyma18g01040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g01040

Paralog	Evidence	Comments
Glyma11g37130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g01040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g007100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g01040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g01040

Limit To All Plant Sequences

>Glyma18g01040.1   sequence type=CDS   gene model=Glyma18g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTATGGCGGAGGAAGAAGAAAGCGGAGTATCGATACAACTGGAATTCCCGAAGGGTCGGGTGAAGAAGATTATGGCGCTGGACAAAGACGTGAAGAGGGTGAGCTCAGAAGCGTTGTTTCTGGTGTCGCGCTCCACGGAATTATTCCTCCAATTCCTGGCTGAAAAATCGGCGCAGGTTGCGATTGAAAAGAAACGGAAGACCGTGAATCTGGAACATATAAGAGAGGCCGTGAAGAGGCACCAGCCAACCAGGGATTTTCTCCTCGATGAGCTTCCGCCGCCATCTCAGCCCACCAAGCCCGATAGGCCCACTCAGCCTGCCGGTCGGCCCAAATTGGATCCTCCTCCCCGTGGTACTCGCCGCATCGATCTATTTTTCCGGAAACCAGAACTTGACGACCCAGCCCAAGCCCAACCACCTGAAAATCCAGCTCAAGCTCAACCGCCTGAAAATCCAGACCAAGACCAAGCCCAATCGCCAGTACCCGTAGATGAGTCTTAG

Predicted protein sequences of Glyma18g01040

Limit To All Plant Sequences

>Glyma18g01040.1   sequence type=predicted peptide   gene model=Glyma18g01040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMAEEEESGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIREAVKRHQPTRDFLLDELPPPSQPTKPDRPTQPAGRPKLDPPPRGTRRIDLFFRKPELDDPAQAQPPENPAQAQPPENPDQDQAQSPVPVDES*

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