Glyma18g01010 - SoyBase

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Report for Sequence Feature Glyma18g01010

Feature Type:	gene_model
Chromosome:	Gm18
Start:	495174
stop:	501637
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g01010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67370	AT	Annotation by Michelle Graham. TAIR10: DNA-binding HORMA family protein \| chr1:25239347-25243713 REVERSE LENGTH=596	SoyBase	E_val: 0	ISS
GO:0006302	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0007129	GO-bp	Annotation by Michelle Graham. GO Biological Process: synapsis	SoyBase	N/A	ISS
GO:0007130	GO-bp	Annotation by Michelle Graham. GO Biological Process: synaptonemal complex assembly	SoyBase	N/A	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0010212	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0032504	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0051026	GO-bp	Annotation by Michelle Graham. GO Biological Process: chiasma assembly	SoyBase	N/A	ISS
GO:0000785	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromatin	SoyBase	N/A	ISS
GO:0000794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: condensed nuclear chromosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG4652	KOG	HORMA domain	JGI		ISS
PTHR21518	Panther	MEIOSIS SPECIFIC PROTEIN HOP1	JGI		ISS
PF02301	PFAM	HORMA domain	JGI		ISS
UniRef100_G7JBZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HORMA domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JBZ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DFD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFD2 related cluster n=1 Tax=unknown RepID=UPI000233DFD2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g01010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g01010 not represented in the dataset	Glyma18g01010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g01010

Paralog	Evidence	Comments
Glyma11g37091	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g01010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g006800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g01010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g01010

Limit To All Plant Sequences

>Glyma18g01010.3   sequence type=transcript   gene model=Glyma18g01010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCACACTAACGGCATTGCCATCGTGCGCGGCCTATAAATACTTTCATCCCCTACCGCTACATTCCTCATTCAATTTTTTTTATATAACGAAGTGAAACACACTCTTCTCTCACTTTGAGTTTGCGACTCTGGAATTCCGCTACAATGGTCGTTGCACAGAAAGTTAAGGAAGCTGAAATCACCGAGCAGGATTCACTTCTTCTCACGAGGAACCTGCTCCGAATTGCCATATTCAACATCAGTTATATCAGAGGACTATTTCCTGAGAAGTATTTTAATGATAAGTCTGTTCCCGCGTTAGAGATGAAGATAAAAAAACTTATGCCAGTGGATGCTGAGTCTCGCAGATTGATTGATTGGATGGAGAAAGGTGTATACGATGCTTTACAGAAGAAATACCTGAAGACGCTTCTGTTCTGTGTGTGCGAAGCAGTAGACGGACCGATGATTGAGGAATATGCATTTTCATTTAGCTATTCCAATTCTGACAACCAAGAGGTGTCCATGAATATCAACCGCACTGGAAGCAAAAAGAACCGGGGGACCTTCAAGTACAACTCGACTACAGAAATTACTCCCCAGCAGATGAGGAGTTCTGCGTGTAAGATGATCCGAACTCTGGTTCAGTTGATGAGAACTCTGGAGAAAATGCCAGAAGAGCGCACTATTCTGATGAAGCTCCTCTACTATGATGATGTGACGCCAGCTGATTATGAGCCTCCTTTCTTCAAGGGATGCACTGATGAAGAAGCTTATCATCCATGGGAGAAGAATCCATTGAAAATGGAGGTTGGGAATGTAAACAGCAAGCACTTTGTGTTAGCTCTGAAGGTGAAGAGTGTGCTCGATCCTTGTGAGGATGATAATGAGGGAATCCAAGACGATTTGAGCGCTGGAGATGATTCCATGCAACATAATGAGTATTATGATACTGACAGTGAGGTTGATCTTACTCAAGGGAATCGATATATAGTTGCTCCAATACACAATACCCAGGACCCGGTGGAAGATGAGCAACAACTGGTCCGGGTCAAGGAGTGGATCAACTGTTGTCACCGTGACACCATCGAGCTTAATGACGTTCTATCGAATTTTCCAGACATCTCCGTGGTTCTAACAGAAGAGATCATGGAGAAGCTTGTTGAGGAAGGTGTGCTATCAAAGACAGGGAAGGAAACCTACGCCATTAACAAGGACAAGAAACTAGAATATGAGTTCCCCGTTGTGAAAGAAGAAATTGACGGTCAAATTCCTCAAGCCTTTGACAGAGGTTTGCAGTTTGAAGATCGCATATACATGAAAGCTCTCTATCATGTTCTTCCAATGACACACGTTTCACTCACTAAGCTTCAAAGCTTGCTTGAGGGAGAAGTAAACCAGACAGCAGGACGAAAGATACTAGATAAAATGGTGCGGGATGGGTTTGTTGAACCCAAAGGAAGCAAAAGATTAGGGAAACGTGTTATCCATTCTGAGTTAACTGAAAGAAAATTCATTGAAGTCCAGAAAGCTCTAAGTGCTACTGAAGCTATGGATGTTGATCACTGTGAACCAAACAGCAAGTTCAAAAAAACTGGTTTCCATTTAAATGGAAGCAACTATGACGTGTCTACATGTGGGGTTCTCCACTCCATTGGATCAGATTTAACAAGAATGAAAGTGACATCTGAGACAAACTATAGTGACTCCGGGAGTGGACAGAAAACTATAAAGGCAAAAGAGCCCGGGAACACCCCCATAAGCAGGCCAGTTATCTCAAGAGAGAGTTTTGCGCAAGGCAAAGAGAATGGCAGAACAAATGGAATTGAAAATCAAGGGGACGAAGCTGATACAATTATATGCAGCAAGTCTTCCCAAGACAAACGACCAAGGAAAACTAGCGCGGTGAAGGAGCCTATCAATCAAAATATGAAGCGCCAGAGATCTGAGGCTCAGTAAGCCTGAATTCAGATCCCTGAAATATGTCCGGATGATATAGTAACAAAATCTGACTTGTAAACGCCTTAAACACTATCATATGTGGCGTATAAGACAAGCATATAGTAGTAGTAGCAGAGATAATGACTTGGTAGAAATCCCTGTGGTCTGCTTTTCTAGCCGACTTTTTTTTTTATATATATATTGGCTCACGTCAAATATTGCTGTTAGATTAAGGATAGATGAATCATTTTACAGATTTTATTAGAAGCACTTAATTAATACTCGTTATTTTTTTTGTTATTATATATTATTTTACTTATTATATTCTTTTTTTTTTCCTAACTATGTGTCAAACAGATGAGAGGTTTCCATGAGTTATTTTTTCGCTTTTGCTACTTTTTTATAACTTTTTTCAATTTTTTTAGTTGATAAAAGTTGTCCCACGGCCTCAGATTCATTCCATTTCATTTCGATGACCCACGCTTTGTCATATATTATATTTCCTTACTAAATACTACTAATCATTTCTAACTAGAAAAAATTAAATTCATTGGAATCTCACAAAGGTATGATTGTCACAGTGACCCCATAAGAACTTAAAATTGACTTCCACTAAATTCAGATTAAAAAAAATACAATTTGGCACACTGAGTTACAAATTATAATATGTAATTTGATTACCGATTATTATAACATGTGACATATCCTGTAATCTGCATTCATCTTATATATATAACAGTTCGATGCAAACCTGCTAAGTTTTGTAAGCAAAACAGATTTATAACAAAACAAATTCATTCTAGAA

Coding sequences of Glyma18g01010

Limit To All Plant Sequences

>Glyma18g01010.2   sequence type=CDS   gene model=Glyma18g01010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGTTGCACAGAAAGTTAAGGAAGCTGAAATCACCGAGCAGGATTCACTTCTTCTCACGAGGAACCTGCTCCGAATTGCCATATTCAACATCAGTTATATCAGAGGACTATTTCCTGAGAAGTATTTTAATGATAAGTCTGTTCCCGCGTTAGAGATGAAGATAAAAAAACTTATGCCAGTGGATGCTGAGTCTCGCAGATTGATTGATTGGATGGAGAAAGGTGTATACGATGCTTTACAGAAGAAATACCTGAAGACGCTTCTGTTCTGTGTGTGCGAAGCAGTAGACGGACCGATGATTGAGGAATATGCATTTTCATTTAGCTATTCCAATTCTGACAACCAAGAGGTGTCCATGAATATCAACCGCACTGGAAGCAAAAAGAACCGGGGGACCTTCAAGTACAACTCGACTACAGAAATTACTCCCCAGCAGATGAGGAGTTCTGCGTGTAAGATGATCCGAACTCTGGTTCAGTTGATGAGAACTCTGGAGAAAATGCCAGAAGAGCGCACTATTCTGATGAAGCTCCTCTACTATGATGATGTGACGCCAGCTGATTATGAGCCTCCTTTCTTCAAGGGATGCACTGATGAAGAAGCTTATCATCCATGGGAGAAGAATCCATTGAAAATGGAGGTTGGGAATGTAAACAGCAAGCACTTTGTGTTAGCTCTGAAGGTGAAGAGTGTGCTCGATCCTTGTGAGGATGATAATGAGGGAATCCAAGACGATTTGAGCGCTGGAGATGATTCCATGCAACATAATGAGTATTATGATACTGACAGTGAGGTTGATCTTACTCAAGGGAATCGATATATAGTTGCTCCAATACATAAAGAGCAAGAGCAGGAAGAAAATGGCATGATTGATGAAGACAATACCCAGGACCCGGTGGAAGATGAGCAACAACTGGTCCGGGTCAAGGAGTGGATCAACTGTTGTCACCGTGACACCATCGAGCTTAATGACGTTCTATCGAATTTTCCAGACATCTCCGTGGTTCTAACAGAAGAGATCATGGAGAAGCTTGTTGAGGAAGGTGTGCTATCAAAGACAGGGAAGGAAACCTACGCCATTAACAAGGACAAGAAACTAGAATATGAGTTCCCCGTTGTGAAAGAAGAAATTGACGGTCAAATTCCTCAAGCCTTTGACAGAGGTTTGCAGTTTGAAGATCGCATATACATGAAAGCTCTCTATCATGTTCTTCCAATGACACACGTTTCACTCACTAAGCTTCAAAGCTTGCTTGAGGGAGAAGTAAACCAGACAGCAGGACGAAAGATACTAGATAAAATGGTGCGGGATGGGTTTGTTGAACCCAAAGGAAGCAAAAGATTAGGGAAACGTGTTATCCATTCTGAGTTAACTGAAAGAAAATTCATTGAAGTCCAGAAAGCTCTAAGTGCTACTGAAGCTATGGATGTTGATCACTGTGAACCAAACAGCAAGTTCAAAAAAACTGGTTTCCATTTAAATGGAAGCAACTATGACGTGTCTACATGTGGGGTTCTCCACTCCATTGGATCAGATTTAACAAGAATGAAAGTGACATCTGAGACAAACTATAGTGACTCCGGGAGTGGACAGAAAACTATAAAGGCAAAAGAGCCCGGGAACACCCCCATAAGCAGGCCAGTTATCTCAAGAGAGAGTTTTGCGCAAGGCAAAGAGAATGGCAGAACAAATGGAATTGAAAATCAAGGGGACGAAGCTGATACAATTATATGCAGCAAGTCTTCCCAAGACAAACGACCAAGGAAAACTAGCGCGGTGAAGGAGCCTATCAATCAAAATATGAAGCGCCAGAGATCTGAGGCTCAGTAA

>Glyma18g01010.3   sequence type=CDS   gene model=Glyma18g01010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGTTGCACAGAAAGTTAAGGAAGCTGAAATCACCGAGCAGGATTCACTTCTTCTCACGAGGAACCTGCTCCGAATTGCCATATTCAACATCAGTTATATCAGAGGACTATTTCCTGAGAAGTATTTTAATGATAAGTCTGTTCCCGCGTTAGAGATGAAGATAAAAAAACTTATGCCAGTGGATGCTGAGTCTCGCAGATTGATTGATTGGATGGAGAAAGGTGTATACGATGCTTTACAGAAGAAATACCTGAAGACGCTTCTGTTCTGTGTGTGCGAAGCAGTAGACGGACCGATGATTGAGGAATATGCATTTTCATTTAGCTATTCCAATTCTGACAACCAAGAGGTGTCCATGAATATCAACCGCACTGGAAGCAAAAAGAACCGGGGGACCTTCAAGTACAACTCGACTACAGAAATTACTCCCCAGCAGATGAGGAGTTCTGCGTGTAAGATGATCCGAACTCTGGTTCAGTTGATGAGAACTCTGGAGAAAATGCCAGAAGAGCGCACTATTCTGATGAAGCTCCTCTACTATGATGATGTGACGCCAGCTGATTATGAGCCTCCTTTCTTCAAGGGATGCACTGATGAAGAAGCTTATCATCCATGGGAGAAGAATCCATTGAAAATGGAGGTTGGGAATGTAAACAGCAAGCACTTTGTGTTAGCTCTGAAGGTGAAGAGTGTGCTCGATCCTTGTGAGGATGATAATGAGGGAATCCAAGACGATTTGAGCGCTGGAGATGATTCCATGCAACATAATGAGTATTATGATACTGACAGTGAGGTTGATCTTACTCAAGGGAATCGATATATAGTTGCTCCAATACACAATACCCAGGACCCGGTGGAAGATGAGCAACAACTGGTCCGGGTCAAGGAGTGGATCAACTGTTGTCACCGTGACACCATCGAGCTTAATGACGTTCTATCGAATTTTCCAGACATCTCCGTGGTTCTAACAGAAGAGATCATGGAGAAGCTTGTTGAGGAAGGTGTGCTATCAAAGACAGGGAAGGAAACCTACGCCATTAACAAGGACAAGAAACTAGAATATGAGTTCCCCGTTGTGAAAGAAGAAATTGACGGTCAAATTCCTCAAGCCTTTGACAGAGGTTTGCAGTTTGAAGATCGCATATACATGAAAGCTCTCTATCATGTTCTTCCAATGACACACGTTTCACTCACTAAGCTTCAAAGCTTGCTTGAGGGAGAAGTAAACCAGACAGCAGGACGAAAGATACTAGATAAAATGGTGCGGGATGGGTTTGTTGAACCCAAAGGAAGCAAAAGATTAGGGAAACGTGTTATCCATTCTGAGTTAACTGAAAGAAAATTCATTGAAGTCCAGAAAGCTCTAAGTGCTACTGAAGCTATGGATGTTGATCACTGTGAACCAAACAGCAAGTTCAAAAAAACTGGTTTCCATTTAAATGGAAGCAACTATGACGTGTCTACATGTGGGGTTCTCCACTCCATTGGATCAGATTTAACAAGAATGAAAGTGACATCTGAGACAAACTATAGTGACTCCGGGAGTGGACAGAAAACTATAAAGGCAAAAGAGCCCGGGAACACCCCCATAAGCAGGCCAGTTATCTCAAGAGAGAGTTTTGCGCAAGGCAAAGAGAATGGCAGAACAAATGGAATTGAAAATCAAGGGGACGAAGCTGATACAATTATATGCAGCAAGTCTTCCCAAGACAAACGACCAAGGAAAACTAGCGCGGTGAAGGAGCCTATCAATCAAAATATGAAGCGCCAGAGATCTGAGGCTCAGTAA

Predicted protein sequences of Glyma18g01010

Limit To All Plant Sequences

>Glyma18g01010.2   sequence type=predicted peptide   gene model=Glyma18g01010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVAQKVKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLMPVDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMIEEYAFSFSYSNSDNQEVSMNINRTGSKKNRGTFKYNSTTEITPQQMRSSACKMIRTLVQLMRTLEKMPEERTILMKLLYYDDVTPADYEPPFFKGCTDEEAYHPWEKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDDNEGIQDDLSAGDDSMQHNEYYDTDSEVDLTQGNRYIVAPIHKEQEQEENGMIDEDNTQDPVEDEQQLVRVKEWINCCHRDTIELNDVLSNFPDISVVLTEEIMEKLVEEGVLSKTGKETYAINKDKKLEYEFPVVKEEIDGQIPQAFDRGLQFEDRIYMKALYHVLPMTHVSLTKLQSLLEGEVNQTAGRKILDKMVRDGFVEPKGSKRLGKRVIHSELTERKFIEVQKALSATEAMDVDHCEPNSKFKKTGFHLNGSNYDVSTCGVLHSIGSDLTRMKVTSETNYSDSGSGQKTIKAKEPGNTPISRPVISRESFAQGKENGRTNGIENQGDEADTIICSKSSQDKRPRKTSAVKEPINQNMKRQRSEAQ*

>Glyma18g01010.3   sequence type=predicted peptide   gene model=Glyma18g01010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVAQKVKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLMPVDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMIEEYAFSFSYSNSDNQEVSMNINRTGSKKNRGTFKYNSTTEITPQQMRSSACKMIRTLVQLMRTLEKMPEERTILMKLLYYDDVTPADYEPPFFKGCTDEEAYHPWEKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDDNEGIQDDLSAGDDSMQHNEYYDTDSEVDLTQGNRYIVAPIHNTQDPVEDEQQLVRVKEWINCCHRDTIELNDVLSNFPDISVVLTEEIMEKLVEEGVLSKTGKETYAINKDKKLEYEFPVVKEEIDGQIPQAFDRGLQFEDRIYMKALYHVLPMTHVSLTKLQSLLEGEVNQTAGRKILDKMVRDGFVEPKGSKRLGKRVIHSELTERKFIEVQKALSATEAMDVDHCEPNSKFKKTGFHLNGSNYDVSTCGVLHSIGSDLTRMKVTSETNYSDSGSGQKTIKAKEPGNTPISRPVISRESFAQGKENGRTNGIENQGDEADTIICSKSSQDKRPRKTSAVKEPINQNMKRQRSEAQ*

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