Report for Sequence Feature Glyma18g00970
Feature Type: gene_model
Chromosome: Gm18
Start: 455371
stop: 458169
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g00970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G11780 AT
Annotation by Michelle Graham. TAIR10: oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr1:3977614-3979177 REVERSE LENGTH=345
SoyBase E_val: 1.00E-168 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
KOG2731
KOG
DNA alkylation damage repair protein
JGI ISS
PTHR16557 Panther
ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED
JGI ISS
UniRef100_G7JBY7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Alkylated DNA repair protein alkB-like protein n=1 Tax=Medicago truncatula RepID=G7JBY7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MYF0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYF0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g00970
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g00970
Paralog Evidence Comments
Glyma11g37040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g00970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g006200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g00970
Coding sequences of Glyma18g00970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g00970.1 sequence type=CDS gene model=Glyma18g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTACGGAACCGAGAATGACCGAGATGATTCGGAACGAACGGCGTTCAGAAGAGCAGAGAAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAGGAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATCTATTCTAGAATGCTATCTCCAAAACGATGTGCTTCCTCCGGGTGTTATCGTTCTTCACGACAACTTCACTTCTCCAGTTTTTTCTTTGCAAAATCGCCCAGGCTTTTATTTTATTCCTGGGGCATTAAGCATAGAGAGACAATGTAGTTTGATCAGGGAGAGTTTGACTGATTTTCCGCAGCCACCGAACAGAACAAATCACAATGCCATGTATGGTCCTATTCAGGATGTGTTTGTTGCGGCTAAAGAAGGGAAAGTTTTGGTTGAAGACAACTCTCCAATTACTTCATCTGAAACTGATACTGATATAGATCATAAAGATGGTAAGGAATGGAAGTTTACTACTGAAAAGGACGCGCTGTCAAGAAAGTGCAGATCAGCTTCTGCTTCTGTGTTACTTCGAAAGTTGCGATGGAGCACCCTTGGCCTACAATTTGATTGGTCCAAGCGGAATTATGATGTGTCTCTCCCACATAACAAAATCCCTGAAGCATTGTGCGAGCTTGCCAAACAATTGGCAAAACCTGCTTTGCCTACTGGTGTTGAATTCAGACCTGAAGCTGCAATAGTGAATTACTTCGGCTTAGGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAGTCTGGGCTGCAAAGCTATATTTCTTTTAGGAGGAAAATCCAGAGAGGATACTCCCCTGGCAATGTTCCTTCAAAGTGGCGATGTTGTACTTATGGCTGGAGATGCAAGGGAATGCTTTCATGGGGTCCCTCGGATCTTCACAGATAAAGAAAATGCTGAAATAGGCCATCTTGAGACACAGCTGACGCGTGAAGATGATCTTTGTTTCTTACAATACATTCAAACTTCTAGAATCAACATCAATATCAGACAAGTTTTTTGA
Predicted protein sequences of Glyma18g00970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g00970.1 sequence type=predicted peptide gene model=Glyma18g00970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYGTENDRDDSERTAFRRAEKKYKLYYDNNASSKNKRKKLPKPVDLTEVLDFRSILECYLQNDVLPPGVIVLHDNFTSPVFSLQNRPGFYFIPGALSIERQCSLIRESLTDFPQPPNRTNHNAMYGPIQDVFVAAKEGKVLVEDNSPITSSETDTDIDHKDGKEWKFTTEKDALSRKCRSASASVLLRKLRWSTLGLQFDWSKRNYDVSLPHNKIPEALCELAKQLAKPALPTGVEFRPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSLSLGCKAIFLLGGKSREDTPLAMFLQSGDVVLMAGDARECFHGVPRIFTDKENAEIGHLETQLTREDDLCFLQYIQTSRININIRQVF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
