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Report for Sequence Feature Glyma18g00940

Feature Type:gene_model
Chromosome:Gm18
Start:447818
stop:449424
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g00940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27930AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF579) | chr1:9731510-9732379 REVERSE LENGTH=289 SoyBaseE_val: 4.00E-123ISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF04669PFAM Protein of unknown function (DUF579) JGI ISS
UniRef100_B6TXL0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plant-specific domain TIGR01627 family protein n=1 Tax=Zea mays RepID=B6TXL0_MAIZE SoyBaseE_val: 4.00E-73ISS
UniRef100_I1MYE7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYE7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g00940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00940
ParalogEvidenceComments
Glyma11g37020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g006000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g00940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g00940
>Glyma18g00940.2   sequence type=CDS   gene model=Glyma18g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCATAACACAACACGCACATACATAATTAACACCATATCTCACCTCACCTTATCACACACATGCAACAACACAAAGGTAACAAGGAGCTTTAAAAAACAAATGATGAAGAACCGTTATCCGTTGCCGGAGAGACGGTGGTTCGTGGCTATGGCCGTCGTGGGCTTGATCGCCACGGCGATGTTCCTCACCAACGCGATCCGAACCTCGGAAACCTCGTACTTGTGCCCGGGCGCGCTCGGGATCCGAAGCAAAACCCGAACCGAATTCAGCTACGACGCGTCACCGATCCAGCTCCGCGCGATTCTCCACTACGCGACCTCGCGCGTGGTTCCGCAACAATCGGTGTCGGAGATCAAGATCAGTTTGGACGTGATTAAATCACTGGGCCGGCCCATTAACTTCCTCGTCTTCGGGCTGGGCCACGACTCCCTCATGTGGGCCTCATTCAACCCGGGCGGCACCACTGTGTTCCTCGAGGAGGACCCGAAGTGGGTCCACTCGATCCTTAAAGACGCGCCGGGCCTGCGGGCCCATACTGTGCGTTACCGCACGCAGCTACGCGACGCGAAGGGGCTTCTCACCTCGTACCGCTCCGAACCTTCGTGTTCTCCCACGAAGGCGTACCTGCGAGGCAACGAAGCGTGCAAGCTGGCGCTGGAGAATCTTCCCGACGAGGTTTACGAGACCGAGTGGGACTTGATAATGATTGACGCGCCGAAGGGGTATTTCGCGGAGGCGCCGGGGAGGATGGCGGCGGTGTTCTCCGCCGCGGTGATGGCGAGGAACAGGAAGGGATCGGGTGTGACGCACGTGTTTTTGCATGACGTGGATCGGAAGGTGGAGAAGGTGTACGCGGAGGAGTTTCTTTGTAGGAAGAACTTGGTCAAGGGTGTTGGAAGGCTTTGGCACTTCCAGATACCTCCTTCTAACGACACACATGCTTCTCGTTTCTGCTAG
Predicted protein sequences of Glyma18g00940
>Glyma18g00940.2   sequence type=predicted peptide   gene model=Glyma18g00940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFHNTTRTYIINTISHLTLSHTCNNTKVTRSFKKQMMKNRYPLPERRWFVAMAVVGLIATAMFLTNAIRTSETSYLCPGALGIRSKTRTEFSYDASPIQLRAILHYATSRVVPQQSVSEIKISLDVIKSLGRPINFLVFGLGHDSLMWASFNPGGTTVFLEEDPKWVHSILKDAPGLRAHTVRYRTQLRDAKGLLTSYRSEPSCSPTKAYLRGNEACKLALENLPDEVYETEWDLIMIDAPKGYFAEAPGRMAAVFSAAVMARNRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKNLVKGVGRLWHFQIPPSNDTHASRFC*






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