Glyma18g00903 - SoyBase

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Report for Sequence Feature Glyma18g00903

Feature Type:	gene_model
Chromosome:	Gm18
Start:	426939
stop:	431809
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00903

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43270	AT	Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 2 \| chr5:17360527-17362143 REVERSE LENGTH=419	SoyBase	E_val: 7.00E-61	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03110	PFAM	SBP domain	JGI		ISS
UniRef100_G7JBG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Squamosa promoter-binding-like protein n=1 Tax=Medicago truncatula RepID=G7JBG3_MEDTR	SoyBase	E_val: 4.00E-179	ISS
UniRef100_UPI000233E997	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E997 related cluster n=1 Tax=unknown RepID=UPI000233E997	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00903

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g00903 not represented in the dataset	Glyma18g00903 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00903

Paralog	Evidence	Comments
Glyma11g36980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00903 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g005600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00903

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g00903

Limit To All Plant Sequences

>Glyma18g00903.1   sequence type=CDS   gene model=Glyma18g00903   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGGAATGCAAAATCTCTCGGGCAATGGGACTGGGAGCACTTATTCTTCAATACAAAAGCAGCTGAGAATCCAAGGTTACAACCAACTGATTGTAGCAGTGAAGCAGATCCAGAAATCAATGTTGGACTGTTGTATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAATACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGCAGGGAATCTATATTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAATTGTGCAATGGAGAGCCGGTTGAAACTTCTCCAGCAGCAGTGCCCTCTCCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAACGATTGTACTTTGAGGATGTCTGCACCGGAAGTGATTCCAAGAAACCATCTTCCTTTGAGGTTCCCATTTTATCAGGGAAGAAATATAAAACAAGTAGTCAGACTGTACAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGAGTTTGTGAAGCTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGTAGGCAACGACTTTCAGATCACAATGCAAGGCGCCGCAAAACTCAGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCTCCCTATGATGGGAGGCAAATAATGAGCCCATTTGCATTTTCAAGGACTGCTACAAATTTAGCTTGGCAAGATATGCACAGCAGCAAGCACCCCCAAACAAAAGAATTCCTCCCGAAGCCTGCCAAAGCCTTCAATAAGATACCGAGTATAGTCTCTATGCTTTCTGATGATTCCAGTGGCCTTCTAACATCTAGAGGCATAGCAACGAAGAGTATTGTTCCAGGTATGGAAGTTCCAAATGGTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACGAATTCATCATGGTGTCCATATGAGACCAAGTCCCTTTCTCTGGAACACTCCACTCGGACAACACACTCAATCACTCAGCATCGTTTACCACTTCCTTCCTCGGAGTATTGGCACACTGATCAACAAAATTCAAGCATGTGTATCTCATTCTCGGATTGCGATAGCAGCAATCGCTTTCAAGACTTTCAGCTCTTGAGCTCACCCTATGAATCAGGTTTTCCGTGCAACCAACTGGATTAA

Predicted protein sequences of Glyma18g00903

Limit To All Plant Sequences

>Glyma18g00903.1   sequence type=predicted peptide   gene model=Glyma18g00903   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWNAKSLGQWDWEHLFFNTKAAENPRLQPTDCSSEADPEINVGLLYPSGGSACSGSELIHASSSRSSKSASNNSSSNGDSRESILTLEGSQDDSTGKKELCNGEPVETSPAAVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKKPSSFEVPILSGKKYKTSSQTVQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVIAGLERRFCQQCSRFHALSEFDDKKRSCRQRLSDHNARRRKTQPDSIQLNPSALSSSPYDGRQIMSPFAFSRTATNLAWQDMHSSKHPQTKEFLPKPAKAFNKIPSIVSMLSDDSSGLLTSRGIATKSIVPGMEVPNGTQDVNRALSLLSTNSSWCPYETKSLSLEHSTRTTHSITQHRLPLPSSEYWHTDQQNSSMCISFSDCDSSNRFQDFQLLSSPYESGFPCNQLD*

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