Glyma18g00870 - SoyBase

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Report for Sequence Feature Glyma18g00870

Feature Type:	gene_model
Chromosome:	Gm18
Start:	409887
stop:	414948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27340	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr1:9495741-9497857 FORWARD LENGTH=467	SoyBase	E_val: 0	ISS
GO:0010305	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0010928	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0060776	GO-bp	Annotation by Michelle Graham. GO Biological Process: simple leaf morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7JBG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7JBG1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MYE0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1MYE0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00870

Paralog	Evidence	Comments
Glyma11g36960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g005400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g00870

Limit To All Plant Sequences

>Glyma18g00870.2   sequence type=transcript   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTAGGAGACATGCAAGGAGGATATATTCCTTCTCTCTAACCTTGTTCAATTCTCTTGCTATTAAACCCTTTGACTATTAACAAAGAGACTAGGAATATATACTTGCATAAGATAAAATAAGCTTTTGGATAAGCTAAATGAGAGATCCTAGAAATTAGCTTATGCAAAAAGCTTATTTCATTTTTCCTTCCTAGTTTCATCTTCTCTAAGTGCTTGTGAAAAAGTTTATCCAAACAAGGCCTTAATGAACTGCATATCATACTTGGCAATATTAGCAATGGACGACCTCCCTTGACATTGAGGATAGCTCTGTAGATGACTTATGTGGCCTTGTAATGACAGCTAGAAAGTCTGGCAGTTTCAGGATGTCAGATCCTGTAAAGCCTCCACCTTCTAAGAAGTCTCGAAGAGACAGAAGCAGGGGCAAATCATCTGGAAGATCTTGCACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCTGCATTGTACTCAAGTCACACAAGAAAGCCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTATGACCCTTCATTGAAAAAATGGCATCACCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCTGGCGGTTTAGTTTGCTTCCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGTTCGATCAGTTAAGGTCTGGTCTCGTGTTGCTGTAGGGATGACTACAAATGGAAACTCTGTTGGTTCAGGCTACAAGATCTTATGGGTGGGTTGTGATGGAGAATATGAAGTATACGACTCAGTCAGAAATTCTTGGAGTCGTCCGGGAAACATGCCTGCGGGTATGAAGCTGCCATTGTCAATCAACTTTAGGTCTCAAGCTGTCTCTATTGGCAGCACACTTTACTTCATGCGTTCAGACCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTCGTGGGTTTGCTCACGAAGAATGCAGCCACTTGTGTATGCATATGGGAGTTGCAGAAAATGACTCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAAGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGCATGATTTCACATCTATCTCTAACAGCAATGGCCTAGCAACGGCCTGCCATTCCCCCCCCCCAGTCTCGGTTCTTTTGCAATTTGCAGGCCTTTGGTGTTGTTGTACGTAATCCTAATGTTCATTGCTGGTTTAACAAAGTAGATGAAAAATAATATTGGTTTGTAGTAATTCACGTTTTTTCATGCTCTCAGACATGTAAACATTACTTTGGTTGTGTTATTAATGCCTCATCCTGGGGAACACCTTGGTAAAAGGTGATATAAAACTGCAGTTTCTTTCTGTATTCAGAGTGTGAATGGTTTTTTCTTAGATTTGTTTGTGCTATGGGGAGGAGCAAGAGAGGATCCTTGATGAGGTCTTATGGATGGAAGTAAATATAGTTTTCATATTTATTGTTTCCATTACCCAACAATTTGATT

>Glyma18g00870.3   sequence type=transcript   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTATTTACATGGAACATAATTATCAAAGCGAAACTCATAAAACTAATAAGAATTTATCATATTATTTGTTAATATTTGTTCTGGCCCAAAACCAACTATTCGAAGGCTAGTTTTGAAATTAAAGGTGTATAATGATTTTTTTTTTCATAACTTGACTCTGTTTTATAGTTCCACGATTTATAAGTAAGAATAAAATTGAACTATTTGGAAGAGAGGGGGAAAGGATTCAATAGGGAGGGAGTAGTTTATTTTAGAGAGGGAACAACCCCCAAAATAAACTAGAATCCGCGCGATCAAACAAGCATTCGCCAAAACGACTTAATAGAAAAACGAAGGAACAAACTCAAAGATGAAGATGGACGACCTCCCTTGACATTGAGGATAGCTCTGTAGATGACTTATGTGGCCTTGTAATGACAGCTAGAAAGTCTGGCAGTTTCAGGATGTCAGATCCTGTAAAGCCTCCACCTTCTAAGAAGTCTCGAAGAGACAGAAGCAGGGGCAAATCATCTGGAAGATCTTGCACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCTGCATTGTACTCAAGTCACACAAGAAAGCCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTATGACCCTTCATTGAAAAAATGGCATCACCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCTGGCGGTTTAGTTTGCTTCCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGTTCGATCAGTTAAGGTCTGGTCTCGTGTTGCTGTAGGGATGACTACAAATGGAAACTCTGTTGGTTCAGGCTACAAGATCTTATGGGTGGGTTGTGATGGAGAATATGAAGTATACGACTCAGTCAGAAATTCTTGGAGTCGTCCGGGAAACATGCCTGCGGGTATGAAGCTGCCATTGTCAATCAACTTTAGGTCTCAAGCTGTCTCTATTGGCAGCACACTTTACTTCATGCGTTCAGACCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTCGTGGGTTTGCTCACGAAGAATGCAGCCACTTGTGTATGCATATGGGAGTTGCAGAAAATGACTCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAAGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGCATGATTTCACATCTATCTCTAACAGCAATGGCCTAGCAACGGCCTGCCATTCCCCCCCCCCAGTCTCGGTTCTTTTGCAATTTGCAGGCCTTTGGTGTTGTTGTACGTAATCCTAATGTTCATTGCTGGTTTAACAAAGTAGATGAAAAATAATATTGGTTTGTAGTAATTCACGTTTTTTCATGCTCTCAGACATGTAAACATTACTTTGGTTGTGTTATTAATGCCTCATCCTGGGGAACACCTTGGTAAAAGGTGATATAAAACTGCAGTTTCTTTCTGTATTCAGAGTGTGAATGGTTTTTTCTTAGATTTGTTTGTGCTATGGGGAGGAGCAAGAGAGGATCCTTGATGAGGTCTTATGGATGGAAGTAAATATAGTTTTCATATTTATTGTTTCCATTACCCAACAATTTGATT

Coding sequences of Glyma18g00870

Limit To All Plant Sequences

>Glyma18g00870.1   sequence type=CDS   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGGCTGGGCATGCTGAAGCAGCTCATTGGTCAGCTTCAGCAGCTCTTGGACACTTACCAGTCTCAATCTCATTCTTCTTCTACTCTCATTCTTCAACCTCCTCACACTCTCCTCTTTCAACAACAACACCCCAGATGGACGACCTCCCTTGACATTGAGGATAGCTCTGTAGATGACTTATGTGGCCTTGTAATGACAGCTAGAAAGTCTGGCAGTTTCAGGATGTCAGATCCTGTAAAGCCTCCACCTTCTAAGAAGTCTCGAAGAGACAGAAGCAGGGGCAAATCATCTGGAAGATCTTGCACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCTGCATTGTACTCAAGTCACACAAGAAAGCCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTATGACCCTTCATTGAAAAAATGGCATCACCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCTGGCGGTTTAGTTTGCTTCCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGTTCGATCAGTTAAGGTCTGGTCTCGTGTTGCTGTAGGGATGACTACAAATGGAAACTCTGTTGGTTCAGGCTACAAGATCTTATGGGTGGGTTGTGATGGAGAATATGAAGTATACGACTCAGTCAGAAATTCTTGGAGTCGTCCGGGAAACATGCCTGCGGGTATGAAGCTGCCATTGTCAATCAACTTTAGGTCTCAAGCTGTCTCTATTGGCAGCACACTTTACTTCATGCGTTCAGACCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTCGTGGGTTTGCTCACGAAGAATGCAGCCACTTGTGTATGCATATGGGAGTTGCAGAAAATGACTCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAAGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGCATGA

>Glyma18g00870.2   sequence type=CDS   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGCTAGAAAGTCTGGCAGTTTCAGGATGTCAGATCCTGTAAAGCCTCCACCTTCTAAGAAGTCTCGAAGAGACAGAAGCAGGGGCAAATCATCTGGAAGATCTTGCACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCTGCATTGTACTCAAGTCACACAAGAAAGCCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTATGACCCTTCATTGAAAAAATGGCATCACCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCTGGCGGTTTAGTTTGCTTCCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGTTCGATCAGTTAAGGTCTGGTCTCGTGTTGCTGTAGGGATGACTACAAATGGAAACTCTGTTGGTTCAGGCTACAAGATCTTATGGGTGGGTTGTGATGGAGAATATGAAGTATACGACTCAGTCAGAAATTCTTGGAGTCGTCCGGGAAACATGCCTGCGGGTATGAAGCTGCCATTGTCAATCAACTTTAGGTCTCAAGCTGTCTCTATTGGCAGCACACTTTACTTCATGCGTTCAGACCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTCGTGGGTTTGCTCACGAAGAATGCAGCCACTTGTGTATGCATATGGGAGTTGCAGAAAATGACTCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAAGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGCATGA

>Glyma18g00870.3   sequence type=CDS   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGCTAGAAAGTCTGGCAGTTTCAGGATGTCAGATCCTGTAAAGCCTCCACCTTCTAAGAAGTCTCGAAGAGACAGAAGCAGGGGCAAATCATCTGGAAGATCTTGCACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCTGCATTGTACTCAAGTCACACAAGAAAGCCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTATGACCCTTCATTGAAAAAATGGCATCACCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCCGTGGCTTCTGCTGGCGGTTTAGTTTGCTTCCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGTTCGATCAGTTAAGGTCTGGTCTCGTGTTGCTGTAGGGATGACTACAAATGGAAACTCTGTTGGTTCAGGCTACAAGATCTTATGGGTGGGTTGTGATGGAGAATATGAAGTATACGACTCAGTCAGAAATTCTTGGAGTCGTCCGGGAAACATGCCTGCGGGTATGAAGCTGCCATTGTCAATCAACTTTAGGTCTCAAGCTGTCTCTATTGGCAGCACACTTTACTTCATGCGTTCAGACCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTCGTGGGTTTGCTCACGAAGAATGCAGCCACTTGTGTATGCATATGGGAGTTGCAGAAAATGACTCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAAGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGCATGA

Predicted protein sequences of Glyma18g00870

Limit To All Plant Sequences

>Glyma18g00870.1   sequence type=predicted peptide   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGLGMLKQLIGQLQQLLDTYQSQSHSSSTLILQPPHTLLFQQQHPRWTTSLDIEDSSVDDLCGLVMTARKSGSFRMSDPVKPPPSKKSRRDRSRGKSSGRSCTTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSLHCTQVTQESPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFKELPVRSVKVWSRVAVGMTTNGNSVGSGYKILWVGCDGEYEVYDSVRNSWSRPGNMPAGMKLPLSINFRSQAVSIGSTLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA*

>Glyma18g00870.2   sequence type=predicted peptide   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTARKSGSFRMSDPVKPPPSKKSRRDRSRGKSSGRSCTTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSLHCTQVTQESPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFKELPVRSVKVWSRVAVGMTTNGNSVGSGYKILWVGCDGEYEVYDSVRNSWSRPGNMPAGMKLPLSINFRSQAVSIGSTLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA*

>Glyma18g00870.3   sequence type=predicted peptide   gene model=Glyma18g00870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTARKSGSFRMSDPVKPPPSKKSRRDRSRGKSSGRSCTTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSLHCTQVTQESPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFKELPVRSVKVWSRVAVGMTTNGNSVGSGYKILWVGCDGEYEVYDSVRNSWSRPGNMPAGMKLPLSINFRSQAVSIGSTLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA*

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