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Report for Sequence Feature Glyma18g00850

Feature Type:gene_model
Chromosome:Gm18
Start:404351
stop:406453
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27300AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:9483324-9484194 FORWARD LENGTH=200 SoyBaseE_val: 2.00E-20ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_C6SZ09UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ09_SOYBN SoyBaseE_val: 9.00E-134ISS
UniRef100_Q9FZK5UniRef Annotation by Michelle Graham. Most informative UniRef hit: F17L21.9 n=1 Tax=Arabidopsis thaliana RepID=Q9FZK5_ARATH SoyBaseE_val: 9.00E-18ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g36940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g005200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g00850.2   sequence type=transcript   gene model=Glyma18g00850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCCACTCTCCCACTTATTATGTGGTGAGGCTAAGTCATCGTGTTGTGTATAGACAAGTTTCCCATGAAAAGGTAAGAAGCACTAACGCCACTTCCCAAAGTTGGATGATGCTAGAGATGAGGAGAAGACCCAAAAAACAAAACCAAAACGCCACGTCTCTTGTGGTTTTCATTCAATAATACACCTCTTGTCGGTGGCCGATGGGTGAGAACAGAGAAAGACCCTTTTATTATTATTGAAGTCCAAACAACATACAAGCATGGAACAAGATCGAAGGTTTGAGCTCATCGACCAAGCAATTCAGAAGCTTGTACACGACAACACCAACAAAGTCCAAGAATCCCTCCATAACAATGATGCTCAATACCAACACCCTCTTTCCCACCTTCTCTCTGTCTCTCAGTTGAAAATGTTGAAAGGAGAAGAGATACTTGAGCAATTCGAAGCTTCTAGTTCTTCTGAGCCGGTGGCTTCTATAACTCAGGAAACAGAAAGTGAAAATGAGGATGCTGGGGAAAGTAAGGGAAGTGAAAATGATGAGATAATCAAAGAACTGAAGAAGTTGAAGAGGCAGAACTTCGTGACTCATTGTCTTCTTTCGGTGATGATTGTTCTCACTGTGGCTTGGCAACTATCGGAGGTTTCTCTTATTTTGAAAGTCAAAGATGGAATAAGCCACCCTTTTAGATCATTTGGAAATATGCTCAAAGGGATGGTGAAAGTCCCTAACATGAATGGCCAGGAAGCTGATGACAAAGAACACCCATCTGAATCTCCATCCATTCCTTCAATGATCATTCCAAATATGTCTCATAATGGAAACTAGTGAAACTTGCCATTTTCTTGTGGTGTTTAATCTATTCTAAATTGGTTGAAAGTAATATAACAAAGGAAATGACCTTTGCAAGTGCGGACAGGCGTTGTGTCTTATTGTAGCACACTCATGAATCATACATTACCATTGTATCCAATTTGCCATATTTCTCCTGTAGATTTAGACGGGAACTGATAGGAAGCAAGACCTTCATGTCAAAGTCACTTGGTTTAGAATCTTAATCGGATTCTGCACGTAGTTAGTCATTCAATGGAAACGTTCAATTTGGACCGCGCAACTGGATTTTATATGAACCCTGACGAAAAGTTGGAAGGGAAAGGCCGAAAGGGAAAAGAGCCCTTGGGGTCACAATTTAGAAAATGTCCAATGATTATCTTCATCATAGTTTTCACCAAACTAAGAGGACAGGACCTAGTTGACATTCCATTATCCTAATCCATGACTAATTCTAGTGTTGTACACAAGTTTGTTGCATCTCATTATCCCGATTCATTGATTCCTCCCTGACCTGTGCTTCTCTTAGAAGTTTGAACTCTGATTCGGTCAGGGTAACAGCATGAGAAATCTAAGAAGGCAACAGTGTAACTGATATTCAACATTAAGCACTGAGCAATGCATCTGACACCAAATTTGATTCACATCACTGACACCTGCAACATTAGCTCTTCAGCACCTAGCAATGCATTCTGTTTAATGGGAAGGCACTTTTTTTTTTTCTGGGGGTAGAGGAAAAAGGTAGATTTGCTGGAGACTTCGAAATGACTGCTACTCATTTCCGTCATCTATTGGCATTCGGTGTCCGGAGCATGGTCCTCAAGTAACTGATACCAATACGTCCCACAAGGAACCAAAAGGTATACCGGTGTAGCATCTATAGTCATCAGTTGATTACTTTTAAAACCACTTAACCACGGTTATTTGAAAATTACCACACATATATGGCGATTATAGTTGTTCACCAAGTATAAATTTCAGTACAGAAAAGAAAAGGAAA

>Glyma18g00850.1   sequence type=CDS   gene model=Glyma18g00850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAGATCGAAGGTTTGAGCTCATCGACCAAGCAATTCAGAAGCTTGTACACGACAACACCAACAAAGTCCAAGAATCCCTCCATAACAATGATGCTCAATACCAACACCCTCTTTCCCACCTTCTCTCTGTCTCTCAGTTGAAAATGTTGAAAGGAGAAGAGATACTTGAGCAATTCGAAGCTTCTAGTTCTTCTGAGCCGGTGGCTTCTATAACTCAGGAAACAGAAAGTGAAAATGAGGATGCTGGGGAAAGTAAGGGAAGTGAAAATGATGAGATAATCAAAGAACTGAAGAAGTTGAAGAGGCAGAACTTCGTGACTCATTGTCTTCTTTCGGTGATGATTGTTCTCACTGTGGCTTGGCAACTATCGGAGGTTTCTCTTATTTTGAAAGTCAAAGATGGAATAAGCCACCCTTTTAGATCATTTGGAAATATGCTCAAAGGGATGGTGAAAGTCCCTAACATGAATGGCCAGGAAGCTGATGACAAAGAACACCCATCTGAATCTCCATCCATTCCTTCAATGATCATTCCAAATATGTCTCATAATGGAAACTAG

>Glyma18g00850.2   sequence type=CDS   gene model=Glyma18g00850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAGATCGAAGGTTTGAGCTCATCGACCAAGCAATTCAGAAGCTTGTACACGACAACACCAACAAAGTCCAAGAATCCCTCCATAACAATGATGCTCAATACCAACACCCTCTTTCCCACCTTCTCTCTGTCTCTCAGTTGAAAATGTTGAAAGGAGAAGAGATACTTGAGCAATTCGAAGCTTCTAGTTCTTCTGAGCCGGTGGCTTCTATAACTCAGGAAACAGAAAGTGAAAATGAGGATGCTGGGGAAAGTAAGGGAAGTGAAAATGATGAGATAATCAAAGAACTGAAGAAGTTGAAGAGGCAGAACTTCGTGACTCATTGTCTTCTTTCGGTGATGATTGTTCTCACTGTGGCTTGGCAACTATCGGAGGTTTCTCTTATTTTGAAAGTCAAAGATGGAATAAGCCACCCTTTTAGATCATTTGGAAATATGCTCAAAGGGATGGTGAAAGTCCCTAACATGAATGGCCAGGAAGCTGATGACAAAGAACACCCATCTGAATCTCCATCCATTCCTTCAATGATCATTCCAAATATGTCTCATAATGGAAACTAG

>Glyma18g00850.1   sequence type=predicted peptide   gene model=Glyma18g00850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQDRRFELIDQAIQKLVHDNTNKVQESLHNNDAQYQHPLSHLLSVSQLKMLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKLKRQNFVTHCLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVKVPNMNGQEADDKEHPSESPSIPSMIIPNMSHNGN*

>Glyma18g00850.2   sequence type=predicted peptide   gene model=Glyma18g00850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQDRRFELIDQAIQKLVHDNTNKVQESLHNNDAQYQHPLSHLLSVSQLKMLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKLKRQNFVTHCLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVKVPNMNGQEADDKEHPSESPSIPSMIIPNMSHNGN*







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