Report for Sequence Feature Glyma18g00850
Feature Type: gene_model
Chromosome: Gm18
Start: 404351
stop: 406453
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g00850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G27300 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:9483324-9484194 FORWARD LENGTH=200
SoyBase E_val: 2.00E-20 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
UniRef100_C6SZ09 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ09_SOYBN
SoyBase E_val: 9.00E-134 ISS
UniRef100_Q9FZK5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F17L21.9 n=1 Tax=Arabidopsis thaliana RepID=Q9FZK5_ARATH
SoyBase E_val: 9.00E-18 ISS
Expression Patterns of Glyma18g00850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g00850
Paralog Evidence Comments
Glyma11g36940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g00850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g005200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g00850
Transcripts of Glyma18g00850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g00850.2 sequence type=transcript gene model=Glyma18g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CCCCACTCTCCCACTTATTATGTGGTGAGGCTAAGTCATCGTGTTGTGTATAGACAAGTTTCCCATGAAAAGGTAAGAAGCACTAACGCCACTTCCCAAAGTTGGATGATGCTAGAGATGAGGAGAAGACCCAAAAAACAAAACCAAAACGCCACGTCTCTTGTGGTTTTCATTCAATAATACACCTCTTGTCGGTGGCCGATGGGTGAGAACAGAGAAAGACCCTTTTATTATTATTGAAGTCCAAACAACATACAAGCATGGAACAAGATCGAAGGTTTGAGCTCATCGACCAAGCAATTCAGAAGCTTGTACACGACAACACCAACAAAGTCCAAGAATCCCTCCATAACAATGATGCTCAATACCAACACCCTCTTTCCCACCTTCTCTCTGTCTCTCAGTTGAAAATGTTGAAAGGAGAAGAGATACTTGAGCAATTCGAAGCTTCTAGTTCTTCTGAGCCGGTGGCTTCTATAACTCAGGAAACAGAAAGTGAAAATGAGGATGCTGGGGAAAGTAAGGGAAGTGAAAATGATGAGATAATCAAAGAACTGAAGAAGTTGAAGAGGCAGAACTTCGTGACTCATTGTCTTCTTTCGGTGATGATTGTTCTCACTGTGGCTTGGCAACTATCGGAGGTTTCTCTTATTTTGAAAGTCAAAGATGGAATAAGCCACCCTTTTAGATCATTTGGAAATATGCTCAAAGGGATGGTGAAAGTCCCTAACATGAATGGCCAGGAAGCTGATGACAAAGAACACCCATCTGAATCTCCATCCATTCCTTCAATGATCATTCCAAATATGTCTCATAATGGAAACTAGTGAAACTTGCCATTTTCTTGTGGTGTTTAATCTATTCTAAATTGGTTGAAAGTAATATAACAAAGGAAATGACCTTTGCAAGTGCGGACAGGCGTTGTGTCTTATTGTAGCACACTCATGAATCATACATTACCATTGTATCCAATTTGCCATATTTCTCCTGTAGATTTAGACGGGAACTGATAGGAAGCAAGACCTTCATGTCAAAGTCACTTGGTTTAGAATCTTAATCGGATTCTGCACGTAGTTAGTCATTCAATGGAAACGTTCAATTTGGACCGCGCAACTGGATTTTATATGAACCCTGACGAAAAGTTGGAAGGGAAAGGCCGAAAGGGAAAAGAGCCCTTGGGGTCACAATTTAGAAAATGTCCAATGATTATCTTCATCATAGTTTTCACCAAACTAAGAGGACAGGACCTAGTTGACATTCCATTATCCTAATCCATGACTAATTCTAGTGTTGTACACAAGTTTGTTGCATCTCATTATCCCGATTCATTGATTCCTCCCTGACCTGTGCTTCTCTTAGAAGTTTGAACTCTGATTCGGTCAGGGTAACAGCATGAGAAATCTAAGAAGGCAACAGTGTAACTGATATTCAACATTAAGCACTGAGCAATGCATCTGACACCAAATTTGATTCACATCACTGACACCTGCAACATTAGCTCTTCAGCACCTAGCAATGCATTCTGTTTAATGGGAAGGCACTTTTTTTTTTTCTGGGGGTAGAGGAAAAAGGTAGATTTGCTGGAGACTTCGAAATGACTGCTACTCATTTCCGTCATCTATTGGCATTCGGTGTCCGGAGCATGGTCCTCAAGTAACTGATACCAATACGTCCCACAAGGAACCAAAAGGTATACCGGTGTAGCATCTATAGTCATCAGTTGATTACTTTTAAAACCACTTAACCACGGTTATTTGAAAATTACCACACATATATGGCGATTATAGTTGTTCACCAAGTATAAATTTCAGTACAGAAAAGAAAAGGAAA
Coding sequences of Glyma18g00850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g00850.1 sequence type=CDS gene model=Glyma18g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACAAGATCGAAGGTTTGAGCTCATCGACCAAGCAATTCAGAAGCTTGTACACGACAACACCAACAAAGTCCAAGAATCCCTCCATAACAATGATGCTCAATACCAACACCCTCTTTCCCACCTTCTCTCTGTCTCTCAGTTGAAAATGTTGAAAGGAGAAGAGATACTTGAGCAATTCGAAGCTTCTAGTTCTTCTGAGCCGGTGGCTTCTATAACTCAGGAAACAGAAAGTGAAAATGAGGATGCTGGGGAAAGTAAGGGAAGTGAAAATGATGAGATAATCAAAGAACTGAAGAAGTTGAAGAGGCAGAACTTCGTGACTCATTGTCTTCTTTCGGTGATGATTGTTCTCACTGTGGCTTGGCAACTATCGGAGGTTTCTCTTATTTTGAAAGTCAAAGATGGAATAAGCCACCCTTTTAGATCATTTGGAAATATGCTCAAAGGGATGGTGAAAGTCCCTAACATGAATGGCCAGGAAGCTGATGACAAAGAACACCCATCTGAATCTCCATCCATTCCTTCAATGATCATTCCAAATATGTCTCATAATGGAAACTAG
>Glyma18g00850.2 sequence type=CDS gene model=Glyma18g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACAAGATCGAAGGTTTGAGCTCATCGACCAAGCAATTCAGAAGCTTGTACACGACAACACCAACAAAGTCCAAGAATCCCTCCATAACAATGATGCTCAATACCAACACCCTCTTTCCCACCTTCTCTCTGTCTCTCAGTTGAAAATGTTGAAAGGAGAAGAGATACTTGAGCAATTCGAAGCTTCTAGTTCTTCTGAGCCGGTGGCTTCTATAACTCAGGAAACAGAAAGTGAAAATGAGGATGCTGGGGAAAGTAAGGGAAGTGAAAATGATGAGATAATCAAAGAACTGAAGAAGTTGAAGAGGCAGAACTTCGTGACTCATTGTCTTCTTTCGGTGATGATTGTTCTCACTGTGGCTTGGCAACTATCGGAGGTTTCTCTTATTTTGAAAGTCAAAGATGGAATAAGCCACCCTTTTAGATCATTTGGAAATATGCTCAAAGGGATGGTGAAAGTCCCTAACATGAATGGCCAGGAAGCTGATGACAAAGAACACCCATCTGAATCTCCATCCATTCCTTCAATGATCATTCCAAATATGTCTCATAATGGAAACTAG
Predicted protein sequences of Glyma18g00850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g00850.1 sequence type=predicted peptide gene model=Glyma18g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEQDRRFELIDQAIQKLVHDNTNKVQESLHNNDAQYQHPLSHLLSVSQLKMLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKLKRQNFVTHCLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVKVPNMNGQEADDKEHPSESPSIPSMIIPNMSHNGN*
>Glyma18g00850.2 sequence type=predicted peptide gene model=Glyma18g00850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEQDRRFELIDQAIQKLVHDNTNKVQESLHNNDAQYQHPLSHLLSVSQLKMLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKLKRQNFVTHCLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVKVPNMNGQEADDKEHPSESPSIPSMIIPNMSHNGN*