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Report for Sequence Feature Glyma18g00801

Feature Type:gene_model
Chromosome:Gm18
Start:376498
stop:381242
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g00801
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24260AT Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr1:8593790-8595862 REVERSE LENGTH=237 SoyBaseE_val: 3.00E-107ISS
GO:0001708GO-bp Annotation by Michelle Graham. GO Biological Process: cell fate specification SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010093GO-bp Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity SoyBaseN/AISS
GO:0048440GO-bp Annotation by Michelle Graham. GO Biological Process: carpel development SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0048507GO-bp Annotation by Michelle Graham. GO Biological Process: meristem development SoyBaseN/AISS
GO:0048833GO-bp Annotation by Michelle Graham. GO Biological Process: specification of floral organ number SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF19Panther MADS BOX PROTEIN JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_Q5GMP6UniRef Annotation by Michelle Graham. Best UniRef hit: MADS transcription factor n=1 Tax=Glycine max RepID=Q5GMP6_SOYBN SoyBaseE_val: 6.00E-150ISS
UniRef100_Q5GMP6UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS transcription factor n=1 Tax=Glycine max RepID=Q5GMP6_SOYBN SoyBaseE_val: 6.00E-150ISS

Expression Patterns of Glyma18g00801
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g00801 not represented in the dataset
Glyma18g00801 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00801
ParalogEvidenceComments
Glyma11g36890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00801 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g004700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g00801
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g00801
>Glyma18g00801.2   sequence type=transcript   gene model=Glyma18g00801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATATTATAGAGATTTTATACATTCTAAATTTTGTGAGTGTGGACATACTCTGAGCGTGAGAAAGAGAAGGGGAAGAAAGAGAGAGAGTGATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCAGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGCTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAAGGAAGCCTTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTACAACGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAATAAGGTTGGAAGAGTTTCAAATAAATCCACTCCAACTGAATCCCAGTGCTGAAGATATGGGGTATGGACGCCATCCAGGTCAGCCCCAAGGCCATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACCTTGCAAATTGGATATCATCCTGATCCAGTATCAGTGGTGACAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA
Coding sequences of Glyma18g00801
>Glyma18g00801.1   sequence type=CDS   gene model=Glyma18g00801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCAGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGCTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTACAACGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAATAAGGTTGGAAGAGTTTCAAATAAATCCACTCCAACTGAATCCCAGTGCTGAAGATATGGGGTATGGACGCCATCCAGGTCAGCCCCAAGGCCATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACCTTGCAAATTGGATATCATCCTGATCCAGTATCAGTGGTGACAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA

>Glyma18g00801.2   sequence type=CDS   gene model=Glyma18g00801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCAGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGCTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAAGGAAGCCTTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTACAACGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAATAAGGTTGGAAGAGTTTCAAATAAATCCACTCCAACTGAATCCCAGTGCTGAAGATATGGGGTATGGACGCCATCCAGGTCAGCCCCAAGGCCATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACCTTGCAAATTGGATATCATCCTGATCCAGTATCAGTGGTGACAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA
Predicted protein sequences of Glyma18g00801
>Glyma18g00801.1   sequence type=predicted peptide   gene model=Glyma18g00801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSGSSMLKTLERYQKCNYGAPEDNVATKEALVLELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRLEEFQINPLQLNPSAEDMGYGRHPGQPQGHALFQPLECEPTLQIGYHPDPVSVVTEGPSMNNYMAGWLP*

>Glyma18g00801.2   sequence type=predicted peptide   gene model=Glyma18g00801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSGSSMLKTLERYQKCNYGAPEDNVATKEALELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRLEEFQINPLQLNPSAEDMGYGRHPGQPQGHALFQPLECEPTLQIGYHPDPVSVVTEGPSMNNYMAGWLP*






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