Glyma18g00780 - SoyBase

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Report for Sequence Feature Glyma18g00780

Feature Type:	gene_model
Chromosome:	Gm18
Start:	359231
stop:	362807
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16740	AT	Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein \| chr5:5501044-5502856 REVERSE LENGTH=426	SoyBase	E_val: 1.00E-163	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR22950:SF9	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_G7JBE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter n=1 Tax=Medicago truncatula RepID=G7JBE3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MYD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MYD3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00780

Paralog	Evidence	Comments
Glyma11g36880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g004500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g00780

Limit To All Plant Sequences

>Glyma18g00780.2   sequence type=transcript   gene model=Glyma18g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGCAAGATATTGAAATCCATAAGGAAAAGTCTCATAAGCCTTCAACAGAAGTGTATGAATTCTCGAAAGAGTGAAGTTGATAGTAGTGTGTCAGTGCATGGTGTGCAGTGGGCAAATTGCAAGTGTTGCATAGAGGAAAGCAATTGTGACCACATTAATGCCGCAGAAGGCGCAAGTAATGTCGACGCCCAGCGTGATGCTAACGCCAACAGTTCTTTCACTCATGCTGTCATTAACATGGTGGGGATGCTCATAGGTTTGGGGCAACTGTCAACTCCATATGCTGTAGAAAATGGAGGGTGGTCATCTGCATTCTTGCTTATGGGACTAGGGATGATGTGTGCTTATAGTTCTCACATACTTGGAATATGCCTTAGAAAGAATCCCAAGTTAACAAGTTTCGTGGATATTGGGAAGCATGCATTTGGATCAAAAGGAAGAAACGTGGCTGCAACAATCATCTACATGGAAATCTTCATGGCCCTCGTTTCCTACACCATCTCACTACATGATAATTTGACCACAGTCTTTTTGGGGACAAATTTGAATCTGCACTTGCCTAACTTTTCTTCATCCCAGCTCCTAACCGTGGTGGCAGTCTTGATTGCCATGCCTAGTTTGTGGATCAGAGACCTTTCTTCCATATCTTTCCTTTCAAGTGTTGGCATTCTCATGTCTCTGCTCATTTTCCTGTGTGTAGCAGCCACTGCACTCTTAGGATATGTCCAATCTAATCATACCATACCTGTCCTCCACCTCCATAATATTCCATCCGTATCTGGCCTTTACGTTTTCGGCTATGGAGGACATATTGTTTTCCCTGAATTATATACAGCCATGAAAGACCCCTCCAAATTTACCAAGGTTTCTATAGTGAGCTTCGCGGTAGTTACAGCAATTTACACGACATTGGGGTTCATGGGTGCGAAGATGTTTGGTAAGGATGTGAAGTCTCAGATCACACTTAGCATGGCACCGGAGCACATCGTAACAAAGATTGCTCTGTGGGCAACCGTGGTGGCACCCATGACCAAATATGCGCTAGAATTCACCCCATTTGCAATTCAACTAGAGCATGCACTTCCAAGTTCCATGAGTGCCAGGACCAAAACGATAATTAGAGGCTGCATAGGTTCATTTTCACTTTTGGTCATACTAACCCTTGCTCTCTCGGTTCCATATTTTGAGCATGTACTAAGTCTCACTGGTTCCCTTGTTAGTGTTGCCGTTTGTTTAATTTTGCCTTGTGCTTTCTACGTTAAGATATGTTGGGGTCAGATATCAAAGCCTCTCTTACTCCTAAACCTCTTTCTCATCATATTCGGCTTTGTTCTTGCCGTGATGGGCACCATTTCCTCCTCACAGTTACTACTCAAAAATCTTCAATCACATAACTTGAGGCACAAGGAATGA

Coding sequences of Glyma18g00780

Limit To All Plant Sequences

>Glyma18g00780.1   sequence type=CDS   gene model=Glyma18g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACTAGGGATGATGTGTGCTTATAGTTCTCACATACTTGGAATATGCCTTAGAAAGAATCCCAAGTTAACAAGTTTCGTGGATATTGGGAAGCATGCATTTGGATCAAAAGGAAGAAACGTGGCTGCAACAATCATCTACATGGAAATCTTCATGGCCCTCGTTTCCTACACCATCTCACTACATGATAATTTGACCACAGTCTTTTTGGGGACAAATTTGAATCTGCACTTGCCTAACTTTTCTTCATCCCAGCTCCTAACCGTGGTGGCAGTCTTGATTGCCATGCCTAGTTTGTGGATCAGAGACCTTTCTTCCATATCTTTCCTTTCAAGTGTTGGCATTCTCATGTCTCTGCTCATTTTCCTGTGTGTAGCAGCCACTGCACTCTTAGGATATGTCCAATCTAATCATACCATACCTGTCCTCCACCTCCATAATATTCCATCCGTATCTGGCCTTTACGTTTTCGGCTATGGAGGACATATTGTTTTCCCTGAATTATATACAGCCATGAAAGACCCCTCCAAATTTACCAAGGTTTCTATAGTGAGCTTCGCGGTAGTTACAGCAATTTACACGACATTGGGGTTCATGGGTGCGAAGATGTTTGGTAAGGATGTGAAGTCTCAGATCACACTTAGCATGGCACCGGAGCACATCGTAACAAAGATTGCTCTGTGGGCAACCGTGGTGGCACCCATGACCAAATATGCGCTAGAATTCACCCCATTTGCAATTCAACTAGAGCATGCACTTCCAAGTTCCATGAGTGCCAGGACCAAAACGATAATTAGAGGCTGCATAGGTTCATTTTCACTTTTGGTCATACTAACCCTTGCTCTCTCGGTTCCATATTTTGAGCATGTACTAAGTCTCACTGGTTCCCTTGTTAGTGTTGCCGTTTGTTTAATTTTGCCTTGTGCTTTCTACGTTAAGATATGTTGGGGTCAGATATCAAAGCCTCTCTTACTCCTAAACCTCTTTCTCATCATATTCGGCTTTGTTCTTGCCGTGATGGGCACCATTTCCTCCTCACAGTTACTACTCAAAAATCTTCAATCACATAACTTGAGGCACAAGGAATGA

>Glyma18g00780.2   sequence type=CDS   gene model=Glyma18g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGCAAGATATTGAAATCCATAAGGAAAAGTCTCATAAGCCTTCAACAGAAGTGTATGAATTCTCGAAAGAGTGAAGTTGATAGTAGTGTGTCAGTGCATGGTGTGCAGTGGGCAAATTGCAAGTGTTGCATAGAGGAAAGCAATTGTGACCACATTAATGCCGCAGAAGGCGCAAGTAATGTCGACGCCCAGCGTGATGCTAACGCCAACAGTTCTTTCACTCATGCTGTCATTAACATGGTGGGGATGCTCATAGGTTTGGGGCAACTGTCAACTCCATATGCTGTAGAAAATGGAGGGTGGTCATCTGCATTCTTGCTTATGGGACTAGGGATGATGTGTGCTTATAGTTCTCACATACTTGGAATATGCCTTAGAAAGAATCCCAAGTTAACAAGTTTCGTGGATATTGGGAAGCATGCATTTGGATCAAAAGGAAGAAACGTGGCTGCAACAATCATCTACATGGAAATCTTCATGGCCCTCGTTTCCTACACCATCTCACTACATGATAATTTGACCACAGTCTTTTTGGGGACAAATTTGAATCTGCACTTGCCTAACTTTTCTTCATCCCAGCTCCTAACCGTGGTGGCAGTCTTGATTGCCATGCCTAGTTTGTGGATCAGAGACCTTTCTTCCATATCTTTCCTTTCAAGTGTTGGCATTCTCATGTCTCTGCTCATTTTCCTGTGTGTAGCAGCCACTGCACTCTTAGGATATGTCCAATCTAATCATACCATACCTGTCCTCCACCTCCATAATATTCCATCCGTATCTGGCCTTTACGTTTTCGGCTATGGAGGACATATTGTTTTCCCTGAATTATATACAGCCATGAAAGACCCCTCCAAATTTACCAAGGTTTCTATAGTGAGCTTCGCGGTAGTTACAGCAATTTACACGACATTGGGGTTCATGGGTGCGAAGATGTTTGGTAAGGATGTGAAGTCTCAGATCACACTTAGCATGGCACCGGAGCACATCGTAACAAAGATTGCTCTGTGGGCAACCGTGGTGGCACCCATGACCAAATATGCGCTAGAATTCACCCCATTTGCAATTCAACTAGAGCATGCACTTCCAAGTTCCATGAGTGCCAGGACCAAAACGATAATTAGAGGCTGCATAGGTTCATTTTCACTTTTGGTCATACTAACCCTTGCTCTCTCGGTTCCATATTTTGAGCATGTACTAAGTCTCACTGGTTCCCTTGTTAGTGTTGCCGTTTGTTTAATTTTGCCTTGTGCTTTCTACGTTAAGATATGTTGGGGTCAGATATCAAAGCCTCTCTTACTCCTAAACCTCTTTCTCATCATATTCGGCTTTGTTCTTGCCGTGATGGGCACCATTTCCTCCTCACAGTTACTACTCAAAAATCTTCAATCACATAACTTGAGGCACAAGGAATGA

Predicted protein sequences of Glyma18g00780

Limit To All Plant Sequences

>Glyma18g00780.1   sequence type=predicted peptide   gene model=Glyma18g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGMMCAYSSHILGICLRKNPKLTSFVDIGKHAFGSKGRNVAATIIYMEIFMALVSYTISLHDNLTTVFLGTNLNLHLPNFSSSQLLTVVAVLIAMPSLWIRDLSSISFLSSVGILMSLLIFLCVAATALLGYVQSNHTIPVLHLHNIPSVSGLYVFGYGGHIVFPELYTAMKDPSKFTKVSIVSFAVVTAIYTTLGFMGAKMFGKDVKSQITLSMAPEHIVTKIALWATVVAPMTKYALEFTPFAIQLEHALPSSMSARTKTIIRGCIGSFSLLVILTLALSVPYFEHVLSLTGSLVSVAVCLILPCAFYVKICWGQISKPLLLLNLFLIIFGFVLAVMGTISSSQLLLKNLQSHNLRHKE*

>Glyma18g00780.2   sequence type=predicted peptide   gene model=Glyma18g00780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWGKILKSIRKSLISLQQKCMNSRKSEVDSSVSVHGVQWANCKCCIEESNCDHINAAEGASNVDAQRDANANSSFTHAVINMVGMLIGLGQLSTPYAVENGGWSSAFLLMGLGMMCAYSSHILGICLRKNPKLTSFVDIGKHAFGSKGRNVAATIIYMEIFMALVSYTISLHDNLTTVFLGTNLNLHLPNFSSSQLLTVVAVLIAMPSLWIRDLSSISFLSSVGILMSLLIFLCVAATALLGYVQSNHTIPVLHLHNIPSVSGLYVFGYGGHIVFPELYTAMKDPSKFTKVSIVSFAVVTAIYTTLGFMGAKMFGKDVKSQITLSMAPEHIVTKIALWATVVAPMTKYALEFTPFAIQLEHALPSSMSARTKTIIRGCIGSFSLLVILTLALSVPYFEHVLSLTGSLVSVAVCLILPCAFYVKICWGQISKPLLLLNLFLIIFGFVLAVMGTISSSQLLLKNLQSHNLRHKE*

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