Glyma18g00750 - SoyBase

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Report for Sequence Feature Glyma18g00750

Feature Type:	gene_model
Chromosome:	Gm18
Start:	339608
stop:	345073
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14780	AT	Annotation by Michelle Graham. TAIR10: MAC/Perforin domain-containing protein \| chr1:5091020-5093873 FORWARD LENGTH=627	SoyBase	E_val: 8.00E-174	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR19324	Panther	COMPLEMENT COMPONENT C6-9	JGI		ISS
PTHR19324:SF4	Panther	COMPLEMENT COMPONENT C6	JGI		ISS
PF01823	PFAM	MAC/Perforin domain	JGI		ISS
UniRef100_B6SXM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MAC/Perforin domain containing protein n=1 Tax=Zea mays RepID=B6SXM9_MAIZE	SoyBase	E_val: 0	ISS
UniRef100_I1MYD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYD0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00750

Paralog	Evidence	Comments
Glyma11g36850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g004200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g00750

Limit To All Plant Sequences

>Glyma18g00750.1   sequence type=CDS   gene model=Glyma18g00750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGTTTATTTTGTGGTTGGTGGTGATATGAATAAGATGGAGGGTACAGTGTTTCCGAATAATCCCATAGAGTGTTTGGGTAAAGGGTTTGATCTGACAAGTGATTTTCGATTGAAGTTTGCAAAGGGATATGGGAAAAGGTTGGTGGTGGTCGATGAAGTGAACAAAAGGGACATCACGGTTCCTGTTCCTGGAGGAGTAGCTACCATTCCAAATGTTTCCGAGGATATACGCTGTGACAAGGGCGATCGCCTACGCTTCAAGTCTGATGTCCTTCAATTCAACCAGATGTCTGAGTTGCTTAATCAAAAATCAGCAATACAAGGAAAAATTCCTTCGGGCTATTTCAACGCTCTTTTTGATTTGGGTGGTGATTGGTTTCGTGATGCTCATGACATAAAATGTCTTGCTTTTGATGGTTATTTCATTTCCCTGTACTATTTGCACCTCACTGCTTCACACCTCATACTGCAAGAGGAAATAAAGAAGTCTGTTCCAGCTCAGTGGGACCCAGCTTCATTAACCAGGTTCATTCAGACATATGGCACACACATAATAATAGGTATGGCTGTTGGAGGTCAAGATGTAATTTGTGTCAAACAAAAACATTCTTCGAAGGTTCCACCTGGTGATCTAAGAAGACATTTAGAGGATCTAGGAGATATTTTGTTTTCAGATTTAAGAAGCCCTTCTCAACAACAAAGGAACACCCCAGAAGGCAAACAAAAAGTTCCTGAGGTCTTTAAGAGTGTGATGCAATCAAGTACAACGCAGTACACCAGTATTTCAGAAACATCAAGCAAAGATGGCCTCACTATCATTTGTTCAAAAAGAGGAGGGGATGTGTTCAAGCAAAGTCACTCCAACTGGCTCCAGACAGTGGCTTCTAATCCTGAAGCAATCCTCTTCAAGTTTGTACCTATTTCCTCACTTCTCACAGGAATTCCTGGAAGTGGCTATCTTAGTCATGCAATCAATTTGTATTTACGCTATAAGCCCCCTCCGGATGATTTACAATGCTTCTTGGAGTTTCAAATTCCAAGGCAATGGGCACCCATGTTTTATGACCTTCCTCTGAGGCATCAAAGGAAAAAGTGTTCTTCCCCTTCCCTGCAATTTGGTTTCATGTTTCCCAAGCTTCATGTCAGCTGTGCACAGGTAGTAAGTGAACAAAAACCTGTGGTAGGCCTACGGTTGTACTTGGAAGGCAGAAAAAGTGATAGACTTGCAATACATGTACACCACCTTTCAAGCCTCCCAAACACTATGATCTACTCTTCAGGCACATCTTCGTGGCGAGGATCTGATGACAATGAATCCAGTGACATCTTTCTGGAACCTATAAGGTGGAAGGGATTTGCAAACGTGTGCACTGCAGTGGTCAAACATGATCCTACCTGGTTGCAAGAAACAAGTGGTGGTGTTTATATTGTAACCGGTGCACAACTCATTAGTAAAGGGACTTGGCCAAAGAATGTGCTTCACTTGCGCCTACTCTATACTCACATACCCAATTGCAGTATCAGGAAGTCAGAATGGGGTGGTGCACCAGAGGCTTCAAGAAAATCATCTTTCCTCACAAATCTGAGCACAACATTTTCATTCACACAGCAAAGTCCTCCTCAGAAGCAGGCTCCGACAGTACTTGACTCTGGTGTGTATCCAGATGGTCCACCAGTGCCAGTTCGATCTGGCAAAATGCTTAAATATGTGGACACAAGCGAGTTTGTGAGGGGCCCGCATGATGCTCCTGGTCATTGGTTGGTAACTGCTGCTAAGCTTGTTACTGAGGGTGGTAAGATTGGATTACAGGTCAAGTTTGCTTTGTTAGACTACTAG

Predicted protein sequences of Glyma18g00750

Limit To All Plant Sequences

>Glyma18g00750.1   sequence type=predicted peptide   gene model=Glyma18g00750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFVYFVVGGDMNKMEGTVFPNNPIECLGKGFDLTSDFRLKFAKGYGKRLVVVDEVNKRDITVPVPGGVATIPNVSEDIRCDKGDRLRFKSDVLQFNQMSELLNQKSAIQGKIPSGYFNALFDLGGDWFRDAHDIKCLAFDGYFISLYYLHLTASHLILQEEIKKSVPAQWDPASLTRFIQTYGTHIIIGMAVGGQDVICVKQKHSSKVPPGDLRRHLEDLGDILFSDLRSPSQQQRNTPEGKQKVPEVFKSVMQSSTTQYTSISETSSKDGLTIICSKRGGDVFKQSHSNWLQTVASNPEAILFKFVPISSLLTGIPGSGYLSHAINLYLRYKPPPDDLQCFLEFQIPRQWAPMFYDLPLRHQRKKCSSPSLQFGFMFPKLHVSCAQVVSEQKPVVGLRLYLEGRKSDRLAIHVHHLSSLPNTMIYSSGTSSWRGSDDNESSDIFLEPIRWKGFANVCTAVVKHDPTWLQETSGGVYIVTGAQLISKGTWPKNVLHLRLLYTHIPNCSIRKSEWGGAPEASRKSSFLTNLSTTFSFTQQSPPQKQAPTVLDSGVYPDGPPVPVRSGKMLKYVDTSEFVRGPHDAPGHWLVTAAKLVTEGGKIGLQVKFALLDY*

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