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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14210 | AT | Annotation by Michelle Graham. TAIR10: phytoene desaturase 3 | chr4:8190426-8194769 REVERSE LENGTH=566 | SoyBase | E_val: 0 | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016120 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phytoene dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| KOG0029 | KOG | Amine oxidase | JGI | ISS | |
| PTHR10742 | Panther | AMINE OXIDASE | JGI | ISS | |
| PTHR10742:SF6 | Panther | ZETA CAROTENE DESATURASE | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| UniRef100_I1MYC3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYC3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P28553 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phytoene dehydrogenase, chloroplastic/chromoplastic n=1 Tax=Glycine max RepID=CRTI_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g00720 not represented in the dataset |
Glyma18g00720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g36810 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g003900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g00720.2 sequence type=transcript gene model=Glyma18g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTAGAGAATAAAATTAAAGAGATAACAAAAGGGGGGGTGAGAGGTCGCAGGTCTAAATTTTCCACTAACATTTCTAACAAAACTAACAAACTAATATTTTTCGATAAAAAAAAAAGATAAAACAAAGGTCATAATTGGTAGAGTTGATCCTTGACACTATCAAAGCCTTTGCCTTCATGACCAAATAGTTAGGATTTTGATCCTTGCTACCCCACTCTTCTGATTAAGAATTAAATTTCAGTTAAAAGGTTTGGGTTATATTGTGTTTTGTCCAAGTTCAAAAGGCTATAGCTTGAGTGGGCAATTTGGCCTGTCAATGGGATTGATTAGCAGAATATTATTAGTTACGAATTGACATAAATTGCAAAATATTTGTTATTATTGGCACATATTTGTTGCATTCAACTTTCCACATGAAAGACCTTGGTCAACTCACTCATCTCTTGAGGTTAGAAGTACACTTTCAACAAAAAGGAATTTTTGTCAATCAACACAAATATATTCAAGATCTAATTCAATTAGTTGGTCTCACTAATTATGCTCCTGTTGAAACTTCAATGGAAATTAATCTGAAATTGCGACGAGATGAAGGTGACCTTCTACTAGACCTAACTTTCTATCGTAAGCTGGCTGTAAGTATTATTTACCTAACCATCACTAGACCAGGCATCTCATTTGCTGTCCACACAGTTAGCAAATTCATGCAATTTCCTCGGCATTTGCATCTTTCAGCAGTACACTGTATTATTAAGTATCTACTTGGTACTTCCAGCTGTGGTTTTTTCTTCCTTACTGGTGCATCAATACAACTTCAAGCATACAGTGATTTTGATTGGGATGGATGTCCAAACACACAGAAATCCACTACTGGTTGGTGTATGTTCTTAGGGGAAGCTCCAATCTCTTGGAAATGCAAGAAACAAGACTCAATCTCCAAATCGTCCACTGAAGCAGAATACCGTGCCATGTCTACTGCATGCTTTGAGATTATTTGGCTTCGCGGTCTCCTTTCAGAGCTTGATTTTTCACAAGCAAAACCTGCTCCACTGCATGCTGACAATACAAGTGTCATTCAAATTCCACAAATCCTGTTTACCATGAAAGAACGAAGCACATAGAGGTTGATTGTCACTCAATTCGGGAGGCGTATGACCATTGAGTTATCATCTTGCCTCATGTTTCTACATATGTTCAACTCGCTAACATTCTCACAAAATCCTTGATACGTCAGTGTCATAATTTCCTAGTCAGCAAATTGATGCTTTTAGACTTACTAGTATCAATTTGAGGGGGGGTGTCAATGGGATTGATTAGCAGAATATTAGTTATTAATTGATACAAATTGCAGAATATTTGTTATTGGCACAAATATGTTGGCAATTCAAAACAGCAGATCTTACATGATTATACAGCTGTAATTATCTCGTTAATTAGTTATCCCAGCTATAGGATAGCATTTATTGTAGATTGACTATTTAATGCATAGATGTAGAAATCAAATTGTATGAACACTATTTAATGCAGAATTCTCGGAGAACACAGTTTTTCATCTGCAACTTTCTTAGTCTAATATGGCCTCCTAACAGAGCTTTTGGATGAGTTAGTCCATGCCACACTTATTAAACTACTTTGATATGTTTTTTTAGTTTTTCTTTCTAAATGAATCATTTATTGGAAATCATATTATTTAATCAATACAGATCTTTCAATTATCGGAATCCTTATGTTGCAGTTATCTTTGCTTTACAACTTTTTCCCCCTCCCCACAGTTGGGGCTTACCCTAATGTGCAGAACCTTTTTGGAGAACTTGGCATTAATGATCGGTTACAATGGAAAGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTTCTTCCCTCCCCATTGAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATATGTTGAGGCTCAAGATGGTCTTTCTGTTCAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAACATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCACCCGAAAGACTTTGTATGCCGATAGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTAAATTCGCGCATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGTGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCAGTAACTTGCAAGGAATATTATAGCCCAAACCAGTCAATGTTAGAGTTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGATGATATTATTCAAGCCACGATGACTGAGCTTGCCAAACTCTTTCCTGATGAAATTTCTGCAGACCAAAGCAAAGCTAAGATTCTCAAGTACCATGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCAAATTGTGAACCTTGTCGACCCATTCAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCAATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCTGAGCTACTAGCTACTCGGGGCCAGAAAAGAATGGCTAAAGCAAGTGTTGTGTAACAAAAACAAGAATTGAAAGAGTCATGGTAGAGTACAGGAGCATCATTTCAACTTTGGCATTCTTTGTCTGTGGTCAGGACTCAGGAGACCTTCAACTTTATTAGTTCATACGAATAAAGAAAGGCTCAGCTTCTGAAATTTAGCTCACCGTCGTCAACTGTGTGCAATAAGCTATACGGAACAAACGACATGTGTCAACTTAAAGTCAGCCCATTGTTTTGTTATCCTCCAATTTTCTGGATCAATGTTTGTATTGGAAAGAAATATGTCATTATTCAAACTTGTTTATATCCACTTTTTTTATTTATCAACATTTGTCACAACCTTTCGTTGAGTAGCAAATTATTCCCAGAAAGGCACATTACATATATATATATGCATTGTATATTACACACAATCATATATATATTTATACAAAATAACATATAATAAATATCACCGACAAAATGGTTAGTTTTATTAACATGACAAGC
>Glyma18g00720.1 sequence type=CDS gene model=Glyma18g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCTTGTGGCTATATATCTGCTGCCAACTTCAATTATCTCGTTGGCGCCAGAAACATATCCAAATTCGCTTCTTCAGACGCCACAATTTCGTTTTCATTTGGCGGGAGCGACTCAATGGGTCTTACTTTGCGACCCGCTCCGATTCGTGCTCCTAAGAGGAACCATTTCTCTCCCTTGCGTGTCGTTTGCGTCGATTATCCACGCCCGGAGCTCGAAAACACCGTTAATTTCGTTGAAGCTGCTTACTTGTCTTCCACCTTTCGTGCTTCTCCGCGTCCTCTAAAACCCTTGAACATCGTTATTGCCGGTGCAGGATTGGCTGGTTTATCAACTGCAAAATATTTGGCTGATGCTGGGCATAAACCTATATTGCTGGAAGCAAGAGACGTTCTAGGTGGAAAGGTTGCTGCATGGAAAGACAAGGATGGAGACTGGTACGAGACAGGCCTACACATCTTTTTTGGGGCTTACCCTAATGTGCAGAACCTTTTTGGAGAACTTGGCATTAATGATCGGTTACAATGGAAAGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTTCTTCCCTCCCCATTGAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATATGTTGAGGCTCAAGATGGTCTTTCTGTTCAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAACATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCACCCGAAAGACTTTGTATGCCGATAGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTAAATTCGCGCATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGTGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCAGTAACTTGCAAGGAATATTATAGCCCAAACCAGTCAATGTTAGAGTTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGATGATATTATTCAAGCCACGATGACTGAGCTTGCCAAACTCTTTCCTGATGAAATTTCTGCAGACCAAAGCAAAGCTAAGATTCTCAAGTACCATGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCAAATTGTGAACCTTGTCGACCCATTCAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCAATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCTGAGCTACTAGCTACTCGGGGCCAGAAAAGAATGGCTAAAGCAAGTGTTGTGTAA >Glyma18g00720.2 sequence type=CDS gene model=Glyma18g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCAGTTATCTTTGCTTTACAACTTTTTCCCCCTCCCCACAGTTGGGGCTTACCCTAATGTGCAGAACCTTTTTGGAGAACTTGGCATTAATGATCGGTTACAATGGAAAGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTTCTTCCCTCCCCATTGAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATATGTTGAGGCTCAAGATGGTCTTTCTGTTCAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAACATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCACCCGAAAGACTTTGTATGCCGATAGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTAAATTCGCGCATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGTGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCAGTAACTTGCAAGGAATATTATAGCCCAAACCAGTCAATGTTAGAGTTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGATGATATTATTCAAGCCACGATGACTGAGCTTGCCAAACTCTTTCCTGATGAAATTTCTGCAGACCAAAGCAAAGCTAAGATTCTCAAGTACCATGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCAAATTGTGAACCTTGTCGACCCATTCAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCAATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCTGAGCTACTAGCTACTCGGGGCCAGAAAAGAATGGCTAAAGCAAGTGTTGTGTAA
>Glyma18g00720.1 sequence type=predicted peptide gene model=Glyma18g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAACGYISAANFNYLVGARNISKFASSDATISFSFGGSDSMGLTLRPAPIRAPKRNHFSPLRVVCVDYPRPELENTVNFVEAAYLSSTFRASPRPLKPLNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASVV* >Glyma18g00720.2 sequence type=predicted peptide gene model=Glyma18g00720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLQLSLLYNFFPLPTVGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASVV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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