Glyma18g00720 - SoyBase

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Report for Sequence Feature Glyma18g00720

Feature Type:	gene_model
Chromosome:	Gm18
Start:	317189
stop:	325822
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14210	AT	Annotation by Michelle Graham. TAIR10: phytoene desaturase 3 \| chr4:8190426-8194769 REVERSE LENGTH=566	SoyBase	E_val: 0	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0016120	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phytoene dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
KOG0029	KOG	Amine oxidase	JGI		ISS
PTHR10742	Panther	AMINE OXIDASE	JGI		ISS
PTHR10742:SF6	Panther	ZETA CAROTENE DESATURASE	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
UniRef100_I1MYC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYC3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P28553	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytoene dehydrogenase, chloroplastic/chromoplastic n=1 Tax=Glycine max RepID=CRTI_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00720

Paralog	Evidence	Comments
Glyma11g36810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g003900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g00720

Limit To All Plant Sequences

>Glyma18g00720.2   sequence type=transcript   gene model=Glyma18g00720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAGAGAATAAAATTAAAGAGATAACAAAAGGGGGGGTGAGAGGTCGCAGGTCTAAATTTTCCACTAACATTTCTAACAAAACTAACAAACTAATATTTTTCGATAAAAAAAAAAGATAAAACAAAGGTCATAATTGGTAGAGTTGATCCTTGACACTATCAAAGCCTTTGCCTTCATGACCAAATAGTTAGGATTTTGATCCTTGCTACCCCACTCTTCTGATTAAGAATTAAATTTCAGTTAAAAGGTTTGGGTTATATTGTGTTTTGTCCAAGTTCAAAAGGCTATAGCTTGAGTGGGCAATTTGGCCTGTCAATGGGATTGATTAGCAGAATATTATTAGTTACGAATTGACATAAATTGCAAAATATTTGTTATTATTGGCACATATTTGTTGCATTCAACTTTCCACATGAAAGACCTTGGTCAACTCACTCATCTCTTGAGGTTAGAAGTACACTTTCAACAAAAAGGAATTTTTGTCAATCAACACAAATATATTCAAGATCTAATTCAATTAGTTGGTCTCACTAATTATGCTCCTGTTGAAACTTCAATGGAAATTAATCTGAAATTGCGACGAGATGAAGGTGACCTTCTACTAGACCTAACTTTCTATCGTAAGCTGGCTGTAAGTATTATTTACCTAACCATCACTAGACCAGGCATCTCATTTGCTGTCCACACAGTTAGCAAATTCATGCAATTTCCTCGGCATTTGCATCTTTCAGCAGTACACTGTATTATTAAGTATCTACTTGGTACTTCCAGCTGTGGTTTTTTCTTCCTTACTGGTGCATCAATACAACTTCAAGCATACAGTGATTTTGATTGGGATGGATGTCCAAACACACAGAAATCCACTACTGGTTGGTGTATGTTCTTAGGGGAAGCTCCAATCTCTTGGAAATGCAAGAAACAAGACTCAATCTCCAAATCGTCCACTGAAGCAGAATACCGTGCCATGTCTACTGCATGCTTTGAGATTATTTGGCTTCGCGGTCTCCTTTCAGAGCTTGATTTTTCACAAGCAAAACCTGCTCCACTGCATGCTGACAATACAAGTGTCATTCAAATTCCACAAATCCTGTTTACCATGAAAGAACGAAGCACATAGAGGTTGATTGTCACTCAATTCGGGAGGCGTATGACCATTGAGTTATCATCTTGCCTCATGTTTCTACATATGTTCAACTCGCTAACATTCTCACAAAATCCTTGATACGTCAGTGTCATAATTTCCTAGTCAGCAAATTGATGCTTTTAGACTTACTAGTATCAATTTGAGGGGGGGTGTCAATGGGATTGATTAGCAGAATATTAGTTATTAATTGATACAAATTGCAGAATATTTGTTATTGGCACAAATATGTTGGCAATTCAAAACAGCAGATCTTACATGATTATACAGCTGTAATTATCTCGTTAATTAGTTATCCCAGCTATAGGATAGCATTTATTGTAGATTGACTATTTAATGCATAGATGTAGAAATCAAATTGTATGAACACTATTTAATGCAGAATTCTCGGAGAACACAGTTTTTCATCTGCAACTTTCTTAGTCTAATATGGCCTCCTAACAGAGCTTTTGGATGAGTTAGTCCATGCCACACTTATTAAACTACTTTGATATGTTTTTTTAGTTTTTCTTTCTAAATGAATCATTTATTGGAAATCATATTATTTAATCAATACAGATCTTTCAATTATCGGAATCCTTATGTTGCAGTTATCTTTGCTTTACAACTTTTTCCCCCTCCCCACAGTTGGGGCTTACCCTAATGTGCAGAACCTTTTTGGAGAACTTGGCATTAATGATCGGTTACAATGGAAAGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTTCTTCCCTCCCCATTGAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATATGTTGAGGCTCAAGATGGTCTTTCTGTTCAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAACATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCACCCGAAAGACTTTGTATGCCGATAGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTAAATTCGCGCATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGTGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCAGTAACTTGCAAGGAATATTATAGCCCAAACCAGTCAATGTTAGAGTTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGATGATATTATTCAAGCCACGATGACTGAGCTTGCCAAACTCTTTCCTGATGAAATTTCTGCAGACCAAAGCAAAGCTAAGATTCTCAAGTACCATGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCAAATTGTGAACCTTGTCGACCCATTCAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCAATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCTGAGCTACTAGCTACTCGGGGCCAGAAAAGAATGGCTAAAGCAAGTGTTGTGTAACAAAAACAAGAATTGAAAGAGTCATGGTAGAGTACAGGAGCATCATTTCAACTTTGGCATTCTTTGTCTGTGGTCAGGACTCAGGAGACCTTCAACTTTATTAGTTCATACGAATAAAGAAAGGCTCAGCTTCTGAAATTTAGCTCACCGTCGTCAACTGTGTGCAATAAGCTATACGGAACAAACGACATGTGTCAACTTAAAGTCAGCCCATTGTTTTGTTATCCTCCAATTTTCTGGATCAATGTTTGTATTGGAAAGAAATATGTCATTATTCAAACTTGTTTATATCCACTTTTTTTATTTATCAACATTTGTCACAACCTTTCGTTGAGTAGCAAATTATTCCCAGAAAGGCACATTACATATATATATATGCATTGTATATTACACACAATCATATATATATTTATACAAAATAACATATAATAAATATCACCGACAAAATGGTTAGTTTTATTAACATGACAAGC

Coding sequences of Glyma18g00720

Limit To All Plant Sequences

>Glyma18g00720.1   sequence type=CDS   gene model=Glyma18g00720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTTGTGGCTATATATCTGCTGCCAACTTCAATTATCTCGTTGGCGCCAGAAACATATCCAAATTCGCTTCTTCAGACGCCACAATTTCGTTTTCATTTGGCGGGAGCGACTCAATGGGTCTTACTTTGCGACCCGCTCCGATTCGTGCTCCTAAGAGGAACCATTTCTCTCCCTTGCGTGTCGTTTGCGTCGATTATCCACGCCCGGAGCTCGAAAACACCGTTAATTTCGTTGAAGCTGCTTACTTGTCTTCCACCTTTCGTGCTTCTCCGCGTCCTCTAAAACCCTTGAACATCGTTATTGCCGGTGCAGGATTGGCTGGTTTATCAACTGCAAAATATTTGGCTGATGCTGGGCATAAACCTATATTGCTGGAAGCAAGAGACGTTCTAGGTGGAAAGGTTGCTGCATGGAAAGACAAGGATGGAGACTGGTACGAGACAGGCCTACACATCTTTTTTGGGGCTTACCCTAATGTGCAGAACCTTTTTGGAGAACTTGGCATTAATGATCGGTTACAATGGAAAGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTTCTTCCCTCCCCATTGAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATATGTTGAGGCTCAAGATGGTCTTTCTGTTCAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAACATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCACCCGAAAGACTTTGTATGCCGATAGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTAAATTCGCGCATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGTGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCAGTAACTTGCAAGGAATATTATAGCCCAAACCAGTCAATGTTAGAGTTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGATGATATTATTCAAGCCACGATGACTGAGCTTGCCAAACTCTTTCCTGATGAAATTTCTGCAGACCAAAGCAAAGCTAAGATTCTCAAGTACCATGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCAAATTGTGAACCTTGTCGACCCATTCAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCAATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCTGAGCTACTAGCTACTCGGGGCCAGAAAAGAATGGCTAAAGCAAGTGTTGTGTAA

>Glyma18g00720.2   sequence type=CDS   gene model=Glyma18g00720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGTTATCTTTGCTTTACAACTTTTTCCCCCTCCCCACAGTTGGGGCTTACCCTAATGTGCAGAACCTTTTTGGAGAACTTGGCATTAATGATCGGTTACAATGGAAAGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTTCTTCCCTCCCCATTGAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTTACATGGCCAGAGAAAGTAAAATTTGCAATTGGGCTTCTCCCAGCTATGCTTGGCGGACAGCCATATGTTGAGGCTCAAGATGGTCTTTCTGTTCAAGAATGGATGAAAAAGCAGGGCGTACCTGAACGGGTAACTGATGAGGTGTTCATAGCAATGTCTAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAACATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCACCCGAAAGACTTTGTATGCCGATAGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTAAATTCGCGCATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGGGATGCTTATGTGTTTGCAACTCCAGTGGATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATATGCTGACATGTCAGTAACTTGCAAGGAATATTATAGCCCAAACCAGTCAATGTTAGAGTTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGACGATGATATTATTCAAGCCACGATGACTGAGCTTGCCAAACTCTTTCCTGATGAAATTTCTGCAGACCAAAGCAAAGCTAAGATTCTCAAGTACCATGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCAAATTGTGAACCTTGTCGACCCATTCAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCAATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCTGAGCTACTAGCTACTCGGGGCCAGAAAAGAATGGCTAAAGCAAGTGTTGTGTAA

Predicted protein sequences of Glyma18g00720

Limit To All Plant Sequences

>Glyma18g00720.1   sequence type=predicted peptide   gene model=Glyma18g00720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAACGYISAANFNYLVGARNISKFASSDATISFSFGGSDSMGLTLRPAPIRAPKRNHFSPLRVVCVDYPRPELENTVNFVEAAYLSSTFRASPRPLKPLNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASVV*

>Glyma18g00720.2   sequence type=predicted peptide   gene model=Glyma18g00720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQLSLLYNFFPLPTVGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASVV*

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