Glyma18g00630 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g00630

Feature Type:	gene_model
Chromosome:	Gm18
Start:	266878
stop:	268791
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23730	AT	Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 16 \| chr3:8550222-8551248 FORWARD LENGTH=291	SoyBase	E_val: 2.00E-113	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006073	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0016762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PTHR10963	Panther	SECRETED GLUCOSIDASE-RELATED	JGI		ISS
PTHR10963:SF14	Panther	BETA-GLUCANASE	JGI		ISS
PF00722	PFAM	Glycosyl hydrolases family 16	JGI		ISS
PF06955	PFAM	Xyloglucan endo-transglycosylase (XET) C-terminus	JGI		ISS
UniRef100_G7JAU7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan endotransglycosylase/hydrolase XTH-21 n=1 Tax=Medicago truncatula RepID=G7JAU7_MEDTR	SoyBase	E_val: 2.00E-122	ISS
UniRef100_I1MYB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYB6_SOYBN	SoyBase	E_val: 6.00E-157	ISS

Expression Patterns of Glyma18g00630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00630

Paralog	Evidence	Comments
Glyma11g36730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g003200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g00630

Limit To All Plant Sequences

>Glyma18g00630.3   sequence type=transcript   gene model=Glyma18g00630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCACGCGTCCCACCACCATACAGTACACAATCCATATTCCCAGTCATATTTCCCTAAACCTGTCTCTTCTTTACCACATATATATATATATATAGACACCTCTTTCCCTTGACATCACTACACACAACATTTACATTTCTCTCTCCAGTATGGCTTCTACTCACAATGAGTTTTATGCACTTATGCTAGTGGTGGTGGTTGGCTCCATGGTGGCTTCCTGTGGTGCTAACTTCAACCAAGACTTTGATCTAACATGGGGTGATCACCGTGCTAAGATATTCAATGGTGGTCAGCTTCTATCTCTTTCTCTGGACAAAGTCTCTGGCTCCGGCTTCCAATCCAAGAAAGAGTACCTATTTGGGAGGATCGATATGCAACTCAAGCTCGTTGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCGTCTCAAGGGCCAACTCATGATGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCTTACATTCTCCACACAAACGTGTTTACCAAAGGCCAAGGGAACAGAGAGCAACAGTTCTATCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCTCAACACATCATATTCTTGGTCGATAACATTCCCATAAGGGTGTTCAAGAATGCTGAGACTATTGGCGTTCCTTTCCCGAAGAACCAACCCATGAGAATCTATTCTAGCTTGTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCAAAAGCACCCTTTACAGCATACTACCGCAATTTCAAAGCCACAGAGTTCTCCACCTCTTCTTCCAATTCCTTCTCTGATGCTGCATGGCAGAGCAACGAGCTTGATGCCTATGGCAGAAGAAGACTGAGATGGGCTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCATTCCCGCTGAGTGCAGGCGCTGAGAAATACTATGTTATATTATTATGTGTCAGTCGGTCTTATGATTCTTTAATTTTATGTCTTCCTCGGAGCTATTTTTCGTTTCTCTAAGTTTCTCCTTTATTCATCATCAAAATAAATCAATTAAATTCGTTGTACCACTTTCTTATCAGTTTTATGGTGAGTTTTCACGTCGTGGAGTCAATGATCATTTTAAAAATATGTTTTCTGGCCGTATAATAAAAAGTTGTAGTTGCACTGTAATCAACCTGCAAACTCAACAGTCTCGAACTCTGTTTTGTCTAAATGTCTCTCAATTTCCAACGTCATGGGCAATTTCACAGTCACAAGATAAATTTCTCTCCTAAGCAATGTGCAAC

Coding sequences of Glyma18g00630

Limit To All Plant Sequences

>Glyma18g00630.2   sequence type=CDS   gene model=Glyma18g00630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTATCAAAACATTCTTTGTATTGTGTTTGTGTCAATAACGGTAGTATTTATTTCCGTATGCAGTTGTCGTCTCAAGGGCCAACTCATGATGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCTTACATTCTCCACACAAACGTGTTTACCAAAGGCCAAGGGAACAGAGAGCAACAGTTCTATCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCTCAACACATCATATTCTTGGTCGATAACATTCCCATAAGGGTGTTCAAGAATGCTGAGACTATTGGCGTTCCTTTCCCGAAGAACCAACCCATGAGAATCTATTCTAGCTTGTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCAAAAGCACCCTTTACAGCATACTACCGCAATTTCAAAGCCACAGAGTTCTCCACCTCTTCTTCCAATTCCTTCTCTGATGCTGCATGGCAGAGCAACGAGCTTGATGCCTATGGCAGAAGAAGACTGAGATGGGCTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCATTCCCGCTGAGTGCAGGCGCTGA

>Glyma18g00630.3   sequence type=CDS   gene model=Glyma18g00630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACTCAAGCTCGTTGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCGTCTCAAGGGCCAACTCATGATGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCTTACATTCTCCACACAAACGTGTTTACCAAAGGCCAAGGGAACAGAGAGCAACAGTTCTATCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCTCAACACATCATATTCTTGGTCGATAACATTCCCATAAGGGTGTTCAAGAATGCTGAGACTATTGGCGTTCCTTTCCCGAAGAACCAACCCATGAGAATCTATTCTAGCTTGTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCAAAAGCACCCTTTACAGCATACTACCGCAATTTCAAAGCCACAGAGTTCTCCACCTCTTCTTCCAATTCCTTCTCTGATGCTGCATGGCAGAGCAACGAGCTTGATGCCTATGGCAGAAGAAGACTGAGATGGGCTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCATTCCCGCTGAGTGCAGGCGCTGA

Predicted protein sequences of Glyma18g00630

Limit To All Plant Sequences

>Glyma18g00630.2   sequence type=predicted peptide   gene model=Glyma18g00630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLSKHSLYCVCVNNGSIYFRMQLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTKGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAETIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSTSSSNSFSDAAWQSNELDAYGRRRLRWAQKYFMIYNYCNDLKRFPQGIPAECRR*

>Glyma18g00630.3   sequence type=predicted peptide   gene model=Glyma18g00630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTKGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAETIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSTSSSNSFSDAAWQSNELDAYGRRRLRWAQKYFMIYNYCNDLKRFPQGIPAECRR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain