Glyma18g00590 - SoyBase

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Report for Sequence Feature Glyma18g00590

Feature Type:	gene_model
Chromosome:	Gm18
Start:	236314
stop:	239979
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14030	AT	Annotation by Michelle Graham. TAIR10: selenium-binding protein 1 \| chr4:8098121-8100165 REVERSE LENGTH=490	SoyBase	E_val: 0	ISS
GO:0000103	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate assimilation	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0071291	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to selenium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0008430	GO-mf	Annotation by Michelle Graham. GO Molecular Function: selenium binding	SoyBase	N/A	ISS
KOG0918	KOG	Selenium-binding protein	JGI		ISS
PTHR23300	Panther	SELENIUM-BINDING PROTEIN	JGI		ISS
PF05694	PFAM	56kDa selenium binding protein (SBP56)	JGI		ISS
UniRef100_G7JAS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Selenium binding protein n=1 Tax=Medicago truncatula RepID=G7JAS8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MYB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYB0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00590

Paralog	Evidence	Comments
Glyma11g36670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g002800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g00590

Limit To All Plant Sequences

>Glyma18g00590.1   sequence type=CDS   gene model=Glyma18g00590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACGGTGGGAGAAGGGAAGGTGAGTAGTAATGGTCATGGATGTTGCAAATCAGGGCCAGGCTATGCTTCCCCACTGGAAGCCATTTCTGGTCCCAGAGAGTCTCTCATTTATGTAACCTCTGTCTACACAGGGACCGGAATAGAGAAGCCAGACTATTTGGCGACAGTGGATGTGGATCCAAACTCTCCAACTTATTCCAAAGTCATCCATAGGCTTCCTGTTCCTTATTTAGGTGACGAATTGCATCACACAGGCTGGAATTCATGCAGCTCTTGCCATGGAGACCCCTCAGCAGACCGACGATTTCTCATCGTACCTGCACTCGTATCAGGTCGAGTATATGTGGTTGATGTGAAAACAAATCCAAGGGCTCCATCTTTGCACAAAGTTGTCGAGCCTGCCGATATCATACAGAAGACTGGATTAGCTTATCCACACACATCTCACTGCCTTGCTTCTGGTGATATAATGATCTCGTGTCTTGGAGATAAAGATGGAAATGCTGCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAGGTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCAACCACGTCACAATACCATGATTAGCACATCATGGGGTGCTCCTAGTGCTTTTACAAAAGGTTTTAACTTACAGCATCTCTCTGATGGATTATACGGGAGGCATCTCCATGTATATAGCTGGCCTGGGGGCGAACTGAGACAAACAATGGACCTTGGTGATTCAGGGCTTATACCCTTAGAGATAAGGTTTTTGCATGATCCTGCTAAAGATACAGGTTTTGTCGGCAGTGCATTGACAAGTAACATGATACGATTTTTTAAGACCCAAGATGAATCATGGAGCCATGAGGTTGCCATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCTGAAATGCCTGGGCTTATAACTGATTTTCTGATTTCTCTTGATGATCGGTTTCTGTATTTTGTAAACTGGCTTCATGGGGATATAAGGCAGTATAACATCGAGGACGTTAAAAATCCTAAACTGACTGGACAAGTATGGGTTGGTGGACTTATCCAGAAAGGAAGCCCTGTAGTAGCTATAACTGATGATGGTGAAACATGGCAAGCTGAAGTTCCAGAGATTCAGGGAAACAAGTTGAGAGGGGGCCCTCAGATGATTCAATTGAGTTTAGATGGGAAGCGGCTCTATGCTACCAACTCACTATTTAGTACTTGGGACAAACAATTTTATCCAGAGCTTGTCCAGAAAGGCTCCCACATAATACAGATTGATGTTGATACTGAGAAAGGTGGACTGAAAATCAACCCCAACTTCTTTGTGGACTTTGGAACTGAGCCTGATGGTCCTTCTCTTGCCCATGAGATGAGATATCCTGGTGGTGACTGTACTTCAGATATATGGATTTAA

Predicted protein sequences of Glyma18g00590

Limit To All Plant Sequences

>Glyma18g00590.1   sequence type=predicted peptide   gene model=Glyma18g00590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTVGEGKVSSNGHGCCKSGPGYASPLEAISGPRESLIYVTSVYTGTGIEKPDYLATVDVDPNSPTYSKVIHRLPVPYLGDELHHTGWNSCSSCHGDPSADRRFLIVPALVSGRVYVVDVKTNPRAPSLHKVVEPADIIQKTGLAYPHTSHCLASGDIMISCLGDKDGNAAGNGFLLLDSEFNVKGRWEKPGHSPLFGYDFWYQPRHNTMISTSWGAPSAFTKGFNLQHLSDGLYGRHLHVYSWPGGELRQTMDLGDSGLIPLEIRFLHDPAKDTGFVGSALTSNMIRFFKTQDESWSHEVAISVKPLKVQNWILPEMPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDVKNPKLTGQVWVGGLIQKGSPVVAITDDGETWQAEVPEIQGNKLRGGPQMIQLSLDGKRLYATNSLFSTWDKQFYPELVQKGSHIIQIDVDTEKGGLKINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWI*

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