Report for Sequence Feature Glyma18g00570
Feature Type: gene_model
Chromosome: Gm18
Start: 231722
stop: 235067
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g00570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G14000 AT
Annotation by Michelle Graham. TAIR10: Putative methyltransferase family protein | chr4:8090851-8092347 FORWARD LENGTH=290
SoyBase E_val: 7.00E-119 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2920
KOG
Predicted methyltransferase
JGI ISS
PTHR21095 Panther
UNCHARACTERIZED
JGI ISS
PF10294 PFAM
Putative methyltransferase
JGI ISS
UniRef100_I1MYA8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYA8_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q7X8M4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: OJ990528_30.4 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7X8M4_ORYSJ
SoyBase E_val: 4.00E-58 ISS
Expression Patterns of Glyma18g00570
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g00570
Paralog Evidence Comments
Glyma11g36651 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g00570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g002700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g00570
Coding sequences of Glyma18g00570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g00570.1 sequence type=CDS gene model=Glyma18g00570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGCGGCTGCGAACTCTGAGGGCAATGCTCAGAAACCGAGTTCGGAAACGTTTCAGTTATTCTCTTCCTCCGCTTCCGCCTTCGGAATCTTCGACGATGCTGCGCAACAAGTTCCTCCTATACCTCCTCCTCCCTGCGTTGAAGTCCTCGCTTCTGAGGTTCCTTCATCCCTCAAACACAACGTGGACTCTGTAAATTTAGATGGAGTTATTTTGTTAAAGGGGCGGGTGAATACCCAGCAAGTTTTTGGTTTGTCCAACTCCGATTTAGTTCCCGGGAAATATGAAGGAGGACTTAAGCTGTGGGAAGGTTCACTTGATCTAATTAAAGCCCTTCGTTCAGATATAAAAAATGGGCTTATCTCATTTGCTGGGAAGCGAGTATTAGAGGTAGGATGTGGTCATGGACTGCCCGGAATCTTTGCATTTCTTGAGGGGGCAGCTGCTGTACATTTTCAAGACTTCAATGCTGAGGTCCTACGTTGCCTCACAATTCCTAATTTAAAAGCAAATCTTTCTGGAGAATCTCAACCATCATCATCCAACTCGACAATTTGTGACGAGGCAGAAGTTCGCTTTTTTGCTGGCGACTGGAGTGGAATTGATAAACTGCTCCCTCATGTTACTACAGATGCAAAACATAATCAAGGTGATGGTTATGACTTTATTCTTATGGCAGAGACAGTTTACTCAATCAACAGTCTCCAAAATCTCTATAATCTTATCAAGAAGTGCTTGCAACATCCTGATGGAGTAGTGTATATGGCAGCAAAGAAGTATTATTTTGGAGTAGGTGGTGGAACTCGGCGGTTTCTGTCTGTGGTAGAGAAGGATGGTGTCATGACTAGTAGCCTGGTTGCTGAAATCACAGATGGTTCATCTAATGTTCGTGAAGTATGGAAGCTTGCATACAAGTAG
Predicted protein sequences of Glyma18g00570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g00570.1 sequence type=predicted peptide gene model=Glyma18g00570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAAANSEGNAQKPSSETFQLFSSSASAFGIFDDAAQQVPPIPPPPCVEVLASEVPSSLKHNVDSVNLDGVILLKGRVNTQQVFGLSNSDLVPGKYEGGLKLWEGSLDLIKALRSDIKNGLISFAGKRVLEVGCGHGLPGIFAFLEGAAAVHFQDFNAEVLRCLTIPNLKANLSGESQPSSSNSTICDEAEVRFFAGDWSGIDKLLPHVTTDAKHNQGDGYDFILMAETVYSINSLQNLYNLIKKCLQHPDGVVYMAAKKYYFGVGGGTRRFLSVVEKDGVMTSSLVAEITDGSSNVREVWKLAYK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
