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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G31970 | AT | Annotation by Michelle Graham. TAIR10: DNA repair-recombination protein (RAD50) | chr2:13600657-13608815 FORWARD LENGTH=1316 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0016233 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere capping | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0030870 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Mre11 complex | SoyBase | N/A | ISS |
| GO:0004518 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nuclease activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0962 | KOG | DNA repair protein RAD50, ABC-type ATPase/SMC superfamily | JGI | ISS | |
| PTHR18867 | Panther | KINESIN-RELATED | JGI | ISS | |
| PF04423 | PFAM | Rad50 zinc hook motif | JGI | ISS | |
| UniRef100_I1MYA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYA5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SL02 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein RAD50 n=3 Tax=Arabidopsis RepID=RAD50_ARATH | SoyBase | E_val: 0 | ISS |
|
Glyma18g00530 not represented in the dataset |
Glyma18g00530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g002400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g00530.1 sequence type=CDS gene model=Glyma18g00530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTACTGTTGATAAAATGTTGATCAAGGGCATCCGGAGCTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGCCCCAATGGTGCTGGCAAGACAACCATCATTGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCACCTAACGCTAGGTCTGGCCACAGCTTCATCCACGACCCAAAGGTTGCGGGGGAAACCGAAACAAAGGGTCAGATTAAGCTCCGTTTCAAAACGGCCGCCGGTAAAGACGTGGTCTGCGTAAGGTCCTTTCAGCTCACACAGAAGGCCTCCAAGATGGAATACAAGGCTATCGAAAGTGTGCTTCAAACTATTAATCCTCACACTGGCGAGAAAGTTTGCCTCAGCTATCGATGCGCTGACATGGATAAAGAGATTCCTGCCCTCATGGGCGTCTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCATCAAGATGAAGCCAACTGGCCTCTCCAGGATCCTTCTACCTTAAAGAAAAAGTTCGACGATATCTTTTCCGCTACCAGATACACCAAGGCACTCGAAGTTATAAAGAAACTTCACAAGGAGCAGGCTCAAGAGATTAAGACTTACAAGCTCAAACTGGAAAATCTTCAGACTCTCAAAGATGCTGCTTACAAGCTTCGGGAAAGCATTGCACAGGATCAAGAGAAAACAGAGTCTGCAGAATGTCAACTGCAACAGTTGGATGGCAGCATTCAAGAATTGGATCATAAAATTCATCACACGGAGGAAACATTGAAATATTTGCGGAAGCTGCAGGAGCAGATATCAACTAAAACTGCTCAACGAAGCATCCTGTTTAAGGAACAACAGAAACAATATCTAGCTCTCACTGAGGAGATTGAAGACACCGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAAGTTTAGAAACAAAAATAAGCAGGTTGGAAAGAGAAACGGAGGACATTGACTGTACAAGTTCTACCCTTAAGGAGACCATTGCTGAATCCATCGAAGTGATTGCCAAGCTACAAGCTGAAGCAGAAGCTCACATGTCATTCAAGAATGAACGTGATTCCTCCATTCACAATCTTTTCACTACATATAACTTGGGATCTCTTCCAAAGTCACCTTTCAGTGCTGAGGTTGCTTTAAACCTCACTAATCGTGTAAAATCAAGGTTGGAAGATCTTGAGAAGGACCTGGATGATAAAAAGAAGGCAAATGACAATGAAATCAAGATGGCATTTGATTGCTACATGAATGCAAATGACCGTTTGAAACATACTGAGGCTAAAATAAAGGCTATGACAGGGAGCAAGAGTGGCATTTCGAAGCGTATTGAAGAGAAGAAAAATGAGCTTGATTCACTTGAACTTCAAATATCTGATGAAAACTTCTCTCAATTAGATGAAAGAGAAAGAAATTTGGAAAATGAGGTTAAGAGGAAGGCAAGCCAACTCGACGAAAGACAATTTGAACCAAATAAATGTGAAGTGGAAAAGGAGATATATAGTGTAGATCAAAAGATTAAGGCTGTCAGTCGAGAGAAGGATATCATGGTTTCTGATTCACAGGACAGAGTTAAGCTATCTTATAAGAAGGGAGAGTTGGAAAGTCAGAAGAAGAAACATAAAAAGATAATTGATGAACAAAAGGACAAAATAAGAAAGGTGCTGAAAGGGAGGGTTCCTCTTGATAAGGATGTGAAGAAGGAAATTATGCAAGCATTAAGGGCTGTTGGAGCTGAATTTGATGACCTGAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTCAATGTGTTGCAGGTGAAAATACAAGAAGTTAATAGTAACCTATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATATATTGAATCTAAGCTTCAGTCTTTGGACCAGCAATGTTCTGGAATTGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTCCAAAGAAGCAAATATAATATTGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTAATCATGTTTGCCCTTGCTGTGAGCGTCCTTTTTCTCCAGAAGAAGAAGACAGTTTTGTCAAAAAGCAAAGAGTGAAGGCTACCAGTTCAGCTGGACATATGAAAGTTCTCGCCGTAGAATCCTCAAATGCAGAGTCTCATTTTCAGCAATTGGACAAGCTTCGTATGCTTTATGAAGAATATGTTAAACTTGGCAAGGAAACAATCCCTAATTCCGAAAAGGAACTTCAGCAACTTAAAGAAGAGATGGATGACAAATCTCAGGCTCTTGATGATGTTTTAGGCGTTTTAGCACAAGTAAAATCTGACAAGGATTTGGTTGAGACATTGGTGCAACCTGTTGAAAATGCTGACCGGATTTTCCAAGAAATTCAAGCTTTACAAAAGCAAGTTGAGGATTTAGAAGATAAGCATAATTTTCGAGCACAGGGAGTGAGGACTCTAGAAGAGATTCAATTGGAGCTTAACACATTGCAGAGCACAAAGGAGAATTTGCAATCTGAATTGGATCGGTTGAAGGATGAACAGAGGTATATGGAGAAGGATCTATCAAGTATTCAAATGCGGTGGCACACTGTAAGGGAGGAAAAAACAAAGGCAACTAACATATTGCAAGGTGTTAAAAGATTAGAAGAAGAATTGGAACGTTTAACTGAAGAAAAGACCCAAGTTGATCTCGACGAGAAGCATTTGGCAGATGCTCTTGGACCTTTATCCAAGGAGACAGACAAATTACTTGCTAACCATAATGAACTGAAAATTAGACTCGAGCGTGAGTATGAGGACCTGGCTGAACAGAAGAGAAGTTATCAACAAGAAGCTCAAGCACTTTTTAAAATGAATTCTAAGATCAAAACGTATTCTGATTTAAAGAAAGGAGACAGGCTAAAGGAACTGCAGGAAAAGAAATCTTCATCAGAATCTCAACTTCAAAGTTTTGATACAAGGAAGCAGGAAATTTTAGCTGAACTAAACAAAAGTAAAGATTTGATGCGAGGTCAAGATCAACTAAAAAGAAATATTGAGGACAACTTAAATTACCGGAAAACAAAGGCTGAAGTAGATGAGCTAGCACATGAAATTGAAACAATGGAAGAAAATATATTGAAGGCTGGTAGGATTTCCACAGTTGAAACTGAACTCCAGAAACTATCACAGGAGAGGGAGAGACTTCTTTCAGAGTTAAACAGGTGCCGTGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAGGTTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGATACTTTGACCAACTTATCCAGCTTAAGACAACTGAAATGGCCAACAAGGATCTAGACAGATACTACAGTGCACTTGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTGTGGCAGCAAACCTATAGAGGACAAGATATAGACTACATCAGTATTCATTCAGACTCCGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGGTTCTCATGCAGACTGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTTCTGGCCTCTCTTATCATACGGTTGGCTTTAGCTGAAACGTTTTGTCTCAATTGTGGAATACTTGCACTGGACGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTAGCTGCAGCTCTCGTAAGGATCATGGAGGACAGGAAAGGGCAGGAAAATTTTCAGCTAATTGTAATCACTCATGATGAGCGTTTTGCTCAACTGATAGGGCAGCGCCAGCATGCAGAGAGATATTATCGTGTCGCCAAAGATGACCATCAGCACAGTATAATCGAAAGCCAGGAGATATTTGACTGA
>Glyma18g00530.1 sequence type=predicted peptide gene model=Glyma18g00530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDKEIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESAECQLQQLDGSIQELDHKIHHTEETLKYLRKLQEQISTKTAQRSILFKEQQKQYLALTEEIEDTDEELMEWKTKFEERIASLETKISRLERETEDIDCTSSTLKETIAESIEVIAKLQAEAEAHMSFKNERDSSIHNLFTTYNLGSLPKSPFSAEVALNLTNRVKSRLEDLEKDLDDKKKANDNEIKMAFDCYMNANDRLKHTEAKIKAMTGSKSGISKRIEEKKNELDSLELQISDENFSQLDERERNLENEVKRKASQLDERQFEPNKCEVEKEIYSVDQKIKAVSREKDIMVSDSQDRVKLSYKKGELESQKKKHKKIIDEQKDKIRKVLKGRVPLDKDVKKEIMQALRAVGAEFDDLNAKYREAEKEVNVLQVKIQEVNSNLSKHHKDLESRKRYIESKLQSLDQQCSGIDSYLKVLESAKEKRDVQRSKYNIADGMRQMFDPFERVARANHVCPCCERPFSPEEEDSFVKKQRVKATSSAGHMKVLAVESSNAESHFQQLDKLRMLYEEYVKLGKETIPNSEKELQQLKEEMDDKSQALDDVLGVLAQVKSDKDLVETLVQPVENADRIFQEIQALQKQVEDLEDKHNFRAQGVRTLEEIQLELNTLQSTKENLQSELDRLKDEQRYMEKDLSSIQMRWHTVREEKTKATNILQGVKRLEEELERLTEEKTQVDLDEKHLADALGPLSKETDKLLANHNELKIRLEREYEDLAEQKRSYQQEAQALFKMNSKIKTYSDLKKGDRLKELQEKKSSSESQLQSFDTRKQEILAELNKSKDLMRGQDQLKRNIEDNLNYRKTKAEVDELAHEIETMEENILKAGRISTVETELQKLSQERERLLSELNRCRGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYSALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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