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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G43670 | AT | Annotation by Michelle Graham. TAIR10: Sec23/Sec24 protein transport family protein | chr5:17539025-17541733 REVERSE LENGTH=794 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0030127 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: COPII vesicle coat | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1986 | KOG | Vesicle coat complex COPII, subunit SEC23 | JGI | ISS | |
| PTHR11141 | Panther | PROTEIN TRANSPORT PROTEIN SEC23 | JGI | ISS | |
| PF00626 | PFAM | Gelsolin repeat | JGI | ISS | |
| PF04810 | PFAM | Sec23/Sec24 zinc finger | JGI | ISS | |
| PF04811 | PFAM | Sec23/Sec24 trunk domain | JGI | ISS | |
| PF04815 | PFAM | Sec23/Sec24 helical domain | JGI | ISS | |
| PF08033 | PFAM | Sec23/Sec24 beta-sandwich domain | JGI | ISS | |
| UniRef100_G8A123 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein SEC23 n=1 Tax=Medicago truncatula RepID=G8A123_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MY92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY92_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g00420 not represented in the dataset |
Glyma18g00420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g001400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g00420.1 sequence type=CDS gene model=Glyma18g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGGTTGAATTGGAGGCGGTGGAAGGGCTCCGATGGGCGTGGAATTCGTGGGCGGCGGATGGGACAAATATGATAATCCCACTGAGCATAATGTGCACACCCTTGATGTTGTTGAACAGTGAGGTCCCTCTTCTCCCTTACGACCCTCTCCTCTGCTCCCGATGCGGCGCCGTTTTGAACCCCTACGCACGCCTCGACTACCAGTCCCGCATCTGGCACTGCCCCTTCTGCTCCCTACGCAACCCCTTCCCCCGCCCCATCGCCGACACCAACCTCCCCGCCGAACTCTTCCCCACCTACAGCACCGTCGAGTACTCGTCTCCCTCTCCCTCTCCCCCTCCCCCTCCCCCTGCCTTCGTCTTTCTCCTCGATCTCTCCACTCCCCAAGACGAACTTCCTCCCCTCAAGAACCAGCTCCTCCACCTCCTCCACCACTTGCCCGACCACTCCCTCGTCTCTCTCATCACCTTCGACTCCATGGTCTATCTCCACCATCTCTCTTCTTCCCACTTTTCCTCTCTCCTCGTCTTTCACGGCAACCGCCATCTCTCCTCCAATCAGATCCGCCACTTCCTTAACCCCCACCGCCACCAGGCTTTTCTTTTGCCTATTTCCGAATGCCAATTCTCCATCACTACTGCCATTGAAGAGATCCATTCTACATCCAACTCCACCATCTCCGCCTCTCGCCCTCCCAGGTGCACCGGCTCTGCAATCTCCGTCGCCCTTGGTCTTTTGGAGTCTTGCCCCATCAATACAGGCTCCAGGATCTTGGTCTTCACCTCTGGACCTGCTACTCTGGGACCCGGAATCGTTGTCGATTCTGATCGCCGCCAACCCATCAGAACCCACCATCACATCTTCAACGCCCAAGCAACACACTATGCTAAGTCTTCCGCTTTCTATAATCAACTCTCCAAGAGGCTATCCGGTGCATCTGTTGTTCTCGATCTCTTTGCCTGTTCCCTTGATCAAGTTGGGGCAGCCGAGCTCCGAGGACCCGTTGAGCACTCCGGTGGATTCATCGTTCTCTCTGAGTCTTTTGATTCCGATCAGTTCAAGAATTGTCTGAGGCAGATGTTCAGATGTGATGACCAGGGCCACTTGAGAATGAATTTTGATGCGACTATTGAAATAGTCACCACCAAAGACGTGAAAATCTGTGGAGCGCTTGGTCCTTGTGTGTCCCTTGAGAGAAACAACTGTTTGGTGAGCGAGGCTGAGGTTGGAGAAGGTGGCACCTCTGTCTGGAAGTTAAACACGCTCACCCACAAAACTTGCATTGCGTTTTTCTTCCAAGTGAATCAGGAGCAGAAAATGAAAATTCAACCGGGCTCTGCATTTTTAATCCAGTTTATAACGCGATACAGGCAGGGAAACATGATCCGGAAAAGAGTGACGACTGCTGCAAGGCGATGGGTTGCAAGCCATTCGGCAGATATTGGTGCCGGGTTTGATCAAGAAGCCGCAGCTGCAGTCATGGCAAGACTTGCCATTCTCCGGGCAGAAACATGCCATGCCCGTGATGTCATTAGATGGCTGGATGACACGCTTATACGTTTCACTTCCAAGTTTGGGGACTATGTCCCTGAAGATCCATCCTCTTTCCGCCTATCCTCCAACTTCTCCCTTTATCCCCAGTTTATGTACCACCTGAGGCGATCTCAATTCATTGATGTCTCTAACACTACTCCGGATGAAACTGCATTCTTCCGCCTCGTGCTCAATCGCGAGGGAGTAGTAGGATCCCTTATAATGATTCAACCCACACTTTTCCAATATTCGTTTGATGGCCCACCGGTGCCAGTGCTGCTAGATATTCGTTCCATTTCTCCAGATTTTATCTTGCTCTTTGATTCTTTCTTCTGTGTGGTGATTCATTATGGGTCCAAGATTGCCCAGTGGAGGAAGCTGGGTTATGATAAGGACCCCAATCACGAAAGCTTGAGAAAGCTGTTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTTGCTGACCGCCTTCCAGTGCCAAGGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGATTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACCTACACAGAGGGTTCCGACATTATATTTACCGATGACCTCAGCTTGGAAGTTTTTCTGGATCAGTTGCAGGTGCTGGCAGTGCAAAGCTAA
>Glyma18g00420.1 sequence type=predicted peptide gene model=Glyma18g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLVELEAVEGLRWAWNSWAADGTNMIIPLSIMCTPLMLLNSEVPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCPFCSLRNPFPRPIADTNLPAELFPTYSTVEYSSPSPSPPPPPPAFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSLVSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFLNPHRHQAFLLPISECQFSITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLRMNFDATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQVNQEQKMKIQPGSAFLIQFITRYRQGNMIRKRVTTAARRWVASHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTEGSDIIFTDDLSLEVFLDQLQVLAVQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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