Report for Sequence Feature Glyma18g00420
Feature Type: gene_model
Chromosome: Gm18
Start: 134858
stop: 137523
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g00420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G43670 AT
Annotation by Michelle Graham. TAIR10: Sec23/Sec24 protein transport family protein | chr5:17539025-17541733 REVERSE LENGTH=794
SoyBase E_val: 0 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0006888 GO-bp
Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0030127 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: COPII vesicle coat
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1986
KOG
Vesicle coat complex COPII, subunit SEC23
JGI ISS
PTHR11141 Panther
PROTEIN TRANSPORT PROTEIN SEC23
JGI ISS
PF00626 PFAM
Gelsolin repeat
JGI ISS
PF04810 PFAM
Sec23/Sec24 zinc finger
JGI ISS
PF04811 PFAM
Sec23/Sec24 trunk domain
JGI ISS
PF04815 PFAM
Sec23/Sec24 helical domain
JGI ISS
PF08033 PFAM
Sec23/Sec24 beta-sandwich domain
JGI ISS
UniRef100_G8A123 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein SEC23 n=1 Tax=Medicago truncatula RepID=G8A123_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MY92 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY92_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g00420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g00420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g001400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g00420
Coding sequences of Glyma18g00420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g00420.1 sequence type=CDS gene model=Glyma18g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATTTGGTTGAATTGGAGGCGGTGGAAGGGCTCCGATGGGCGTGGAATTCGTGGGCGGCGGATGGGACAAATATGATAATCCCACTGAGCATAATGTGCACACCCTTGATGTTGTTGAACAGTGAGGTCCCTCTTCTCCCTTACGACCCTCTCCTCTGCTCCCGATGCGGCGCCGTTTTGAACCCCTACGCACGCCTCGACTACCAGTCCCGCATCTGGCACTGCCCCTTCTGCTCCCTACGCAACCCCTTCCCCCGCCCCATCGCCGACACCAACCTCCCCGCCGAACTCTTCCCCACCTACAGCACCGTCGAGTACTCGTCTCCCTCTCCCTCTCCCCCTCCCCCTCCCCCTGCCTTCGTCTTTCTCCTCGATCTCTCCACTCCCCAAGACGAACTTCCTCCCCTCAAGAACCAGCTCCTCCACCTCCTCCACCACTTGCCCGACCACTCCCTCGTCTCTCTCATCACCTTCGACTCCATGGTCTATCTCCACCATCTCTCTTCTTCCCACTTTTCCTCTCTCCTCGTCTTTCACGGCAACCGCCATCTCTCCTCCAATCAGATCCGCCACTTCCTTAACCCCCACCGCCACCAGGCTTTTCTTTTGCCTATTTCCGAATGCCAATTCTCCATCACTACTGCCATTGAAGAGATCCATTCTACATCCAACTCCACCATCTCCGCCTCTCGCCCTCCCAGGTGCACCGGCTCTGCAATCTCCGTCGCCCTTGGTCTTTTGGAGTCTTGCCCCATCAATACAGGCTCCAGGATCTTGGTCTTCACCTCTGGACCTGCTACTCTGGGACCCGGAATCGTTGTCGATTCTGATCGCCGCCAACCCATCAGAACCCACCATCACATCTTCAACGCCCAAGCAACACACTATGCTAAGTCTTCCGCTTTCTATAATCAACTCTCCAAGAGGCTATCCGGTGCATCTGTTGTTCTCGATCTCTTTGCCTGTTCCCTTGATCAAGTTGGGGCAGCCGAGCTCCGAGGACCCGTTGAGCACTCCGGTGGATTCATCGTTCTCTCTGAGTCTTTTGATTCCGATCAGTTCAAGAATTGTCTGAGGCAGATGTTCAGATGTGATGACCAGGGCCACTTGAGAATGAATTTTGATGCGACTATTGAAATAGTCACCACCAAAGACGTGAAAATCTGTGGAGCGCTTGGTCCTTGTGTGTCCCTTGAGAGAAACAACTGTTTGGTGAGCGAGGCTGAGGTTGGAGAAGGTGGCACCTCTGTCTGGAAGTTAAACACGCTCACCCACAAAACTTGCATTGCGTTTTTCTTCCAAGTGAATCAGGAGCAGAAAATGAAAATTCAACCGGGCTCTGCATTTTTAATCCAGTTTATAACGCGATACAGGCAGGGAAACATGATCCGGAAAAGAGTGACGACTGCTGCAAGGCGATGGGTTGCAAGCCATTCGGCAGATATTGGTGCCGGGTTTGATCAAGAAGCCGCAGCTGCAGTCATGGCAAGACTTGCCATTCTCCGGGCAGAAACATGCCATGCCCGTGATGTCATTAGATGGCTGGATGACACGCTTATACGTTTCACTTCCAAGTTTGGGGACTATGTCCCTGAAGATCCATCCTCTTTCCGCCTATCCTCCAACTTCTCCCTTTATCCCCAGTTTATGTACCACCTGAGGCGATCTCAATTCATTGATGTCTCTAACACTACTCCGGATGAAACTGCATTCTTCCGCCTCGTGCTCAATCGCGAGGGAGTAGTAGGATCCCTTATAATGATTCAACCCACACTTTTCCAATATTCGTTTGATGGCCCACCGGTGCCAGTGCTGCTAGATATTCGTTCCATTTCTCCAGATTTTATCTTGCTCTTTGATTCTTTCTTCTGTGTGGTGATTCATTATGGGTCCAAGATTGCCCAGTGGAGGAAGCTGGGTTATGATAAGGACCCCAATCACGAAAGCTTGAGAAAGCTGTTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTTGCTGACCGCCTTCCAGTGCCAAGGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGATTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACCTACACAGAGGGTTCCGACATTATATTTACCGATGACCTCAGCTTGGAAGTTTTTCTGGATCAGTTGCAGGTGCTGGCAGTGCAAAGCTAA
Predicted protein sequences of Glyma18g00420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g00420.1 sequence type=predicted peptide gene model=Glyma18g00420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDLVELEAVEGLRWAWNSWAADGTNMIIPLSIMCTPLMLLNSEVPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCPFCSLRNPFPRPIADTNLPAELFPTYSTVEYSSPSPSPPPPPPAFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSLVSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFLNPHRHQAFLLPISECQFSITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLRMNFDATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQVNQEQKMKIQPGSAFLIQFITRYRQGNMIRKRVTTAARRWVASHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTEGSDIIFTDDLSLEVFLDQLQVLAVQS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
