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Report for Sequence Feature Glyma18g00400

Feature Type:gene_model
Chromosome:Gm18
Start:125078
stop:125819
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g00400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30810AT Annotation by Michelle Graham. TAIR10: Gibberellin-regulated family protein | chr2:13127945-13128630 REVERSE LENGTH=106 SoyBaseE_val: 2.00E-28ISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
PF02704PFAM Gibberellin regulated protein JGI ISS
UniRef100_G7K5N0UniRef Annotation by Michelle Graham. Most informative UniRef hit: GAST1 n=1 Tax=Medicago truncatula RepID=G7K5N0_MEDTR SoyBaseE_val: 8.00E-40ISS
UniRef100_I1LX92UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LX92_SOYBN SoyBaseE_val: 4.00E-54ISS

Expression Patterns of Glyma18g00400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g00400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g001200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g00400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g00400
>Glyma18g00400.2   sequence type=CDS   gene model=Glyma18g00400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAAATTTGTGTGTGCACTTCTTCTCATATTTGTCATGGCTTTTGTGACTCAAGTTGCTTATGGTGGTGGAGAAGGATCACTTACGCCCCAAGAATGTCCGGGGGCATGCGATTATCGTTGTTCAAAGGCTCGGGCTAGGAAGGCGTGTTTGTACTTCTGTAACTTGTGCTGTGCAAAATGTTTGTGTGTTCCATCGGGAACCTATGGTCACAAGGAAGAATGTCCATGTTATAACAATTGGAAAACCAATAAAGGAACACCCAAGTGCCCCTAA
Predicted protein sequences of Glyma18g00400
>Glyma18g00400.2   sequence type=predicted peptide   gene model=Glyma18g00400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKFVCALLLIFVMAFVTQVAYGGGEGSLTPQECPGACDYRCSKARARKACLYFCNLCCAKCLCVPSGTYGHKEECPCYNNWKTNKGTPKCP*






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