Glyma18g00390 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g00390

Feature Type:	gene_model
Chromosome:	Gm18
Start:	115513
stop:	121112
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G32940	AT	Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein \| chr3:13491089-13493630 REVERSE LENGTH=607	SoyBase	E_val: 2.00E-68	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0119	KOG	Splicing factor 1/branch point binding protein (RRM superfamily)	JGI		ISS
PTHR11208	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR11208:SF6	Panther	KH-DOMAIN RNA BINDING PROTEIN-RELATED	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
UniRef100_G7JA56	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Branchpoint-bridging protein n=1 Tax=Medicago truncatula RepID=G7JA56_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MY87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MY87_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00390

Paralog	Evidence	Comments
Glyma11g36475	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g001100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g00390

Limit To All Plant Sequences

>Glyma18g00390.5   sequence type=transcript   gene model=Glyma18g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACAACGCAACTTTTGTTTTGTTTTTTGGTTCTCTAATTCTATCATTCTTATTTCATTCCTCCGTGTTTCACTTGTAACAAAACATAACAGTGTAACGAGTAGAAATAAGGTTATGTTAGCAAGGAGATTGTTTTGCAGTTGCTTCGATTTTCCTTTCAAAGCGCTTCGACAAGGAATGAGTTGTGAATTATAATGCGAGTGCCAAAGGCAATTCATTTCTGACTTCAGATTCATCTGTAGCTACTACGTACAAACAGACGAACACCAATTACAGTTTCCGGGTTGTTCAATAAGAGAATGAGTGCTGAGATTGATTCAACTTGTGCTCCTGAACCTCACAAAATGTCTGGCCAAAAGCTCTCTATATTTTCTGCCAAATCTGGATTTGTCATCCCTAAAAACAAATTGTCAGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAGCATGGGGTCACTGTTGGTGCCACCAATGAAGAAAGTTCAAAACAAATTGAGAGGAAATCAAAATGGGGACCTGATCTCACACAAGATGCAGCTGTCAGGAGGGGAAAAGTTTTAGCTTTGCAGATTCGAGTGGACCAAATTACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGAATCCAGATCAAAGCAAATCTGGCCCTCGAATTACCAGCAAGTCAGAAATGCTCGAACTTGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTCCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGGCTTGAAGGTGATAATCAAAAACAACTTGAAAAGGAAACTGGTGCAAAGATAAAAATTCATGGAATCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCTGGAACTGATATCCAGTGCAATTACAAAGAGATGCATGTTAACCTATCAGCTGATAGTTTTGAAAAAGTGGATGCTGCAATGTCAATCATTGAACTGCTAGTTACCTCTGTAATTGGGAATTTAGCTGCTGGTTCTACTCCCTCTATATCAGTTTCTAGGTACAGCACTAATGTTCTGAGTCAAAGCCACGAATGCCCCCCTTCTCATGCAGATTCTCTATCTCTGGAAAACCAGGCTGTGTTGCAACCAGTAGCTGTTACACAAATGCATGGTGATAACTTCCAATACTCTAGTCCATGGTTTTCAGTGGTTCCATCTCATTCCCCTGTGTTTGCTTCGTCTGGCAGTGTAGCCCTCCCAAATCCATTAGGTCTTGCTAGAACTCCCCATTTTCCATCACACACTTCAAACATGACTTCGCCTTTTGGTGCTCAACCTGGACCTGCTGGATTTCAGCCGATTATTCCAAATCAACATGTTTCTGTGCAAGCACCACCACCAAGACAGGTTTTACAGTATTCACATATGACTCAGACAAGTCCTTTGGGTCACATTGGGCCCCCAAGAAACCCTGTACAGAATTTGTTAACTCCAACAAATGCTTCACTTTCATTTCCTGTTACTTTAAGCCAACCAACGCCAATAGGACAACATCAGACATCTGTGTCTTCAATGCATCTACCTATGTCTGGTATATCGTCATCAATACCTAACCAGTCATTGACCCATCTAGGGGTCTCTTCTGGCCAGAACGAAGCCCCTGTCACTGTTAAAATGTCTGTTGGTCCCAGCAATATGGTGCCAATGGCTTCACCAGTGGTTCCACCTGCAAGACCTGTTTCTCTACATCAACAGCCAGATGTTGCATTTAAGCCACCACAGTCAAATATGTCAATGATGCCACGATCTGCCACCTTTCCTCCACATCAAGTAGGAATATCCCCTGGACAACCATCTTCTTTGAGACCAATGCCTGTACCAATATCTGCAAACCATTTATTGGGACCTGTTTCATTTCCTTCACCTGGAATATCCCCTTCACTTCCATTGCCTCAGCAAGCAGGAATACCTAATCTTGCTTTTGGAGTTGCTCCTTATCACACCCATGTAAAACCACCAGTCTTGGGGACATCAAAATCTGGAAATTTTACTTTTCAATCACATCTGCCCAATGCAGACTATGGTCAAGTCTATTCTGGACCAAACAGTCAATCAGGTGCTACACAAGAACCACCTTCTGGTCCACGACCTCCACCATTTGGTTTTGCTGTGCCTGATCAGCCTCGTCAAATCTTTCCAAGGACACAATTCCCTGGTCAAGTGGATCAAGCCGTTGCCTTTGGGGGAAGATCAGGTTCCATCTCGAACTCAATTCCACCACCCAGACATGGTGTGTTTCCATATGCTGGTCAACCTGCACCTAGATCATCAGCCGCACAAATGGGTATGAAGAACTTCATTTCTGCCCCACAAATTCCAAATTTGACCAGTGCTGGTTCCCAAAGAGGCATGCCTATTCGAAAAAGCTATGCTACTCAGATGGCATGGGCAGATATCTCAATGCCTCTGAATCAAAAGTTTGTCAGCAATCCCCCCATGGCTTCTGGTAAGATTGCATATGCTACAGACCAAATTTATGATCCCTTTTCACCCACTTCTGCACCTCCACAACACAAAGGTAATCCTGGAAAATGAGGGAATTGGATGTGGCTACAGATACGTAACTGATAGTGAAAAACTGGAGTCATGACTACAGTTTTAGGCAAACAGGCGCGATACTATTTGTATAGATTAACAATGGCCATGTTACAAAATAATATATGATTTCTTACCGCTAAGTTTGAGTTGAGGACTATTGTATTAAGTGTTTTTTGGGCCTTCCTTTTCAGAATGCCCATTACTGATGCTTGATTAGGAATTGAGTTGAACCAATCTTTGCAGGAATTTGGTCATCTCTCCTCCATGTAACCACATCATTTCATTTGGATTTTTCACTTCGACCAAGTTGCATTTAAGCTTGGTTTCAATGATTGATACTGTTTGTTGACAATTGTAACTTCTACTACTAATAGTTGAATTTTCAAGTATTGTCAGTTTTAAGATTTTTATCTTGTCAATCAATCAGGAATGGTAGGACA

Coding sequences of Glyma18g00390

Limit To All Plant Sequences

>Glyma18g00390.4   sequence type=CDS   gene model=Glyma18g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCTGAGATTGATTCAACTTGTGCTCCTGAACCTCACAAAATGTCTGGCCAAAAGCTCTCTATATTTTCTGCCAAATCTGGATTTGTCATCCCTAAAAACAAATTGTCAGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAGCATGGGGTCACTGTTGGTGCCACCAATGAAGAAAGTTCAAAACAAATTGAGAGGAAATCAAAATGGGGACCTGATCTCACACAAGATGCAGCTGTCAGGAGGGGAAAAGTTTTAGCTTTGCAGATTCGAGTGGACCAAATTACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGAATCCAGATCAAAGCAAATCTGGCCCTCGAATTACCAGCAAGAAGTCAGAAATGCTCGAACTTGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTCCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGGCTTGAAGGTGATAATCAAAAACAACTTGAAAAGGAAACTGGTGCAAAGATAAAAATTCATGGAATCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCTGGAACTGATATCCAGTGCAATTACAAAGAGATGCATGTTAACCTATCAGCTGATAGTTTTGAAAAAGTGGATGCTGCAATGTCAATCATTGAACTGCTAGTTACCTCTGTAATTGGGAATTTAGCTGCTGGTTCTACTCCCTCTATATCAGTTTCTAGGTACAGCACTAATGTTCTGAGTCAAAGCCACGAATGCCCCCCTTCTCATGCAGATTCTCTATCTCTGGAAAACCAGGCTGTGTTGCAACCAGTAGCTGTTACACAAATGCATGGTGATAACTTCCAATACTCTAGTCCATGGTTTTCAGTGGTTCCATCTCATTCCCCTGTGTTTGCTTCGTCTGGCAGTGTAGCCCTCCCAAATCCATTAGGTCTTGCTAGAACTCCCCATTTTCCATCACACACTTCAAACATGACTTCGCCTTTTGGTGCTCAACCTGGACCTGCTGGATTTCAGCCGATTATTCCAAATCAACATGTTTCTGTGCAAGCACCACCACCAAGACAGGTTTTACAGTATTCACATATGACTCAGACAAGTCCTTTGGGTCACATTGGGCCCCCAAGAAACCCTGTACAGAATTTGTTAACTCCAACAAATGCTTCACTTTCATTTCCTGTTACTTTAAGCCAACCAACGCCAATAGGACAACATCAGACATCTGTGTCTTCAATGCATCTACCTATGTCTGGTATATCGTCATCAATACCTAACCAGTCATTGACCCATCTAGGGGTCTCTTCTGGCCAGAACGAAGCCCCTGTCACTGTTAAAATGTCTGTTGGTCCCAGCAATATGGTGCCAATGGCTTCACCAGTGGTTCCACCTGCAAGACCTGTTTCTCTACATCAACAGCCAGATGTTGCATTTAAGCCACCACAGTCAAATATGTCAATGATGCCACGATCTGCCACCTTTCCTCCACATCAAGTAGGAATATCCCCTGGACAACCATCTTCTTTGAGACCAATGCCTGTACCAATATCTGCAAACCATTTATTGGGACCTGTTTCATTTCCTTCACCTGGAATATCCCCTTCACTTCCATTGCCTCAGCAAGCAGGAATACCTAATCTTGCTTTTGGAGTTGCTCCTTATCACACCCATGTAAAACCACCAGTCTTGGGGACATCAAAATCTGGAAATTTTACTTTTCAATCACATCTGCCCAATGCAGACTATGGTCAAGTCTATTCTGGACCAAACAGTCAATCAGGTGCTACACAAGAACCACCTTCTGGTCCACGACCTCCACCATTTGGTTTTGCTGTGCCTGATCAGCCTCGTCAAATCTTTCCAAGGACACAATTCCCTGGTCAAGTGGATCAAGCCGTTGCCTTTGGGGGAAGATCAGGTTCCATCTCGAACTCAATTCCACCACCCAGACATGGTGTGTTTCCATATGCTGGTCAACCTGCACCTAGATCATCAGCCGCACAAATGGGTATGAAGAACTTCATTTCTGCCCCACAAATTCCAAATTTGACCAGTGCTGGTTCCCAAAGAGGCATGCCTATTCGAAAAAGCTATGCTACTCAGATGGCATGGGCAGATATCTCAATGCCTCTGAATCAAAAGTTTGTCAGCAATCCCCCCATGGCTTCTGGTAAGATTGCATATGCTACAGACCAAATTTATGATCCCTTTTCACCCACTTCTGCACCTCCACAACACAAAGGTAATCCTGGAAAATGA

>Glyma18g00390.5   sequence type=CDS   gene model=Glyma18g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCTGAGATTGATTCAACTTGTGCTCCTGAACCTCACAAAATGTCTGGCCAAAAGCTCTCTATATTTTCTGCCAAATCTGGATTTGTCATCCCTAAAAACAAATTGTCAGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAGCATGGGGTCACTGTTGGTGCCACCAATGAAGAAAGTTCAAAACAAATTGAGAGGAAATCAAAATGGGGACCTGATCTCACACAAGATGCAGCTGTCAGGAGGGGAAAAGTTTTAGCTTTGCAGATTCGAGTGGACCAAATTACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGAATCCAGATCAAAGCAAATCTGGCCCTCGAATTACCAGCAAGTCAGAAATGCTCGAACTTGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTCCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGGCTTGAAGGTGATAATCAAAAACAACTTGAAAAGGAAACTGGTGCAAAGATAAAAATTCATGGAATCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCTGGAACTGATATCCAGTGCAATTACAAAGAGATGCATGTTAACCTATCAGCTGATAGTTTTGAAAAAGTGGATGCTGCAATGTCAATCATTGAACTGCTAGTTACCTCTGTAATTGGGAATTTAGCTGCTGGTTCTACTCCCTCTATATCAGTTTCTAGGTACAGCACTAATGTTCTGAGTCAAAGCCACGAATGCCCCCCTTCTCATGCAGATTCTCTATCTCTGGAAAACCAGGCTGTGTTGCAACCAGTAGCTGTTACACAAATGCATGGTGATAACTTCCAATACTCTAGTCCATGGTTTTCAGTGGTTCCATCTCATTCCCCTGTGTTTGCTTCGTCTGGCAGTGTAGCCCTCCCAAATCCATTAGGTCTTGCTAGAACTCCCCATTTTCCATCACACACTTCAAACATGACTTCGCCTTTTGGTGCTCAACCTGGACCTGCTGGATTTCAGCCGATTATTCCAAATCAACATGTTTCTGTGCAAGCACCACCACCAAGACAGGTTTTACAGTATTCACATATGACTCAGACAAGTCCTTTGGGTCACATTGGGCCCCCAAGAAACCCTGTACAGAATTTGTTAACTCCAACAAATGCTTCACTTTCATTTCCTGTTACTTTAAGCCAACCAACGCCAATAGGACAACATCAGACATCTGTGTCTTCAATGCATCTACCTATGTCTGGTATATCGTCATCAATACCTAACCAGTCATTGACCCATCTAGGGGTCTCTTCTGGCCAGAACGAAGCCCCTGTCACTGTTAAAATGTCTGTTGGTCCCAGCAATATGGTGCCAATGGCTTCACCAGTGGTTCCACCTGCAAGACCTGTTTCTCTACATCAACAGCCAGATGTTGCATTTAAGCCACCACAGTCAAATATGTCAATGATGCCACGATCTGCCACCTTTCCTCCACATCAAGTAGGAATATCCCCTGGACAACCATCTTCTTTGAGACCAATGCCTGTACCAATATCTGCAAACCATTTATTGGGACCTGTTTCATTTCCTTCACCTGGAATATCCCCTTCACTTCCATTGCCTCAGCAAGCAGGAATACCTAATCTTGCTTTTGGAGTTGCTCCTTATCACACCCATGTAAAACCACCAGTCTTGGGGACATCAAAATCTGGAAATTTTACTTTTCAATCACATCTGCCCAATGCAGACTATGGTCAAGTCTATTCTGGACCAAACAGTCAATCAGGTGCTACACAAGAACCACCTTCTGGTCCACGACCTCCACCATTTGGTTTTGCTGTGCCTGATCAGCCTCGTCAAATCTTTCCAAGGACACAATTCCCTGGTCAAGTGGATCAAGCCGTTGCCTTTGGGGGAAGATCAGGTTCCATCTCGAACTCAATTCCACCACCCAGACATGGTGTGTTTCCATATGCTGGTCAACCTGCACCTAGATCATCAGCCGCACAAATGGGTATGAAGAACTTCATTTCTGCCCCACAAATTCCAAATTTGACCAGTGCTGGTTCCCAAAGAGGCATGCCTATTCGAAAAAGCTATGCTACTCAGATGGCATGGGCAGATATCTCAATGCCTCTGAATCAAAAGTTTGTCAGCAATCCCCCCATGGCTTCTGGTAAGATTGCATATGCTACAGACCAAATTTATGATCCCTTTTCACCCACTTCTGCACCTCCACAACACAAAGGTAATCCTGGAAAATGA

Predicted protein sequences of Glyma18g00390

Limit To All Plant Sequences

>Glyma18g00390.4   sequence type=predicted peptide   gene model=Glyma18g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAEIDSTCAPEPHKMSGQKLSIFSAKSGFVIPKNKLSGSLVPIFRGAKKHGVTVGATNEESSKQIERKSKWGPDLTQDAAVRRGKVLALQIRVDQITKQLESEKLEVGDTQNLNPDQSKSGPRITSKKSEMLELEKREAIGEILKLDPSYKPPRGFKPLLKEASIPLPVQEYPGYNFVGLIYGLEGDNQKQLEKETGAKIKIHGIKADTGEKGEIKPGTDIQCNYKEMHVNLSADSFEKVDAAMSIIELLVTSVIGNLAAGSTPSISVSRYSTNVLSQSHECPPSHADSLSLENQAVLQPVAVTQMHGDNFQYSSPWFSVVPSHSPVFASSGSVALPNPLGLARTPHFPSHTSNMTSPFGAQPGPAGFQPIIPNQHVSVQAPPPRQVLQYSHMTQTSPLGHIGPPRNPVQNLLTPTNASLSFPVTLSQPTPIGQHQTSVSSMHLPMSGISSSIPNQSLTHLGVSSGQNEAPVTVKMSVGPSNMVPMASPVVPPARPVSLHQQPDVAFKPPQSNMSMMPRSATFPPHQVGISPGQPSSLRPMPVPISANHLLGPVSFPSPGISPSLPLPQQAGIPNLAFGVAPYHTHVKPPVLGTSKSGNFTFQSHLPNADYGQVYSGPNSQSGATQEPPSGPRPPPFGFAVPDQPRQIFPRTQFPGQVDQAVAFGGRSGSISNSIPPPRHGVFPYAGQPAPRSSAAQMGMKNFISAPQIPNLTSAGSQRGMPIRKSYATQMAWADISMPLNQKFVSNPPMASGKIAYATDQIYDPFSPTSAPPQHKGNPGK*

>Glyma18g00390.5   sequence type=predicted peptide   gene model=Glyma18g00390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAEIDSTCAPEPHKMSGQKLSIFSAKSGFVIPKNKLSGSLVPIFRGAKKHGVTVGATNEESSKQIERKSKWGPDLTQDAAVRRGKVLALQIRVDQITKQLESEKLEVGDTQNLNPDQSKSGPRITSKSEMLELEKREAIGEILKLDPSYKPPRGFKPLLKEASIPLPVQEYPGYNFVGLIYGLEGDNQKQLEKETGAKIKIHGIKADTGEKGEIKPGTDIQCNYKEMHVNLSADSFEKVDAAMSIIELLVTSVIGNLAAGSTPSISVSRYSTNVLSQSHECPPSHADSLSLENQAVLQPVAVTQMHGDNFQYSSPWFSVVPSHSPVFASSGSVALPNPLGLARTPHFPSHTSNMTSPFGAQPGPAGFQPIIPNQHVSVQAPPPRQVLQYSHMTQTSPLGHIGPPRNPVQNLLTPTNASLSFPVTLSQPTPIGQHQTSVSSMHLPMSGISSSIPNQSLTHLGVSSGQNEAPVTVKMSVGPSNMVPMASPVVPPARPVSLHQQPDVAFKPPQSNMSMMPRSATFPPHQVGISPGQPSSLRPMPVPISANHLLGPVSFPSPGISPSLPLPQQAGIPNLAFGVAPYHTHVKPPVLGTSKSGNFTFQSHLPNADYGQVYSGPNSQSGATQEPPSGPRPPPFGFAVPDQPRQIFPRTQFPGQVDQAVAFGGRSGSISNSIPPPRHGVFPYAGQPAPRSSAAQMGMKNFISAPQIPNLTSAGSQRGMPIRKSYATQMAWADISMPLNQKFVSNPPMASGKIAYATDQIYDPFSPTSAPPQHKGNPGK*

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