Glyma18g00330 - SoyBase

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Report for Sequence Feature Glyma18g00330

Feature Type:	gene_model
Chromosome:	Gm18
Start:	83340
stop:	88428
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04860	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 2 \| chr1:1369306-1372290 REVERSE LENGTH=961	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1873	KOG	Ubiquitin-specific protease	JGI		ISS
PTHR24006	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24006:SF238	Panther		JGI		ISS
PF00443	PFAM	Ubiquitin carboxyl-terminal hydrolase	JGI		ISS
PF02148	PFAM	Zn-finger in ubiquitin-hydrolases and other protein	JGI		ISS
UniRef100_I1MY83	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glycine max RepID=I1MY83_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F572	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F572 related cluster n=1 Tax=unknown RepID=UPI000233F572	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g00330

Paralog	Evidence	Comments
Glyma11g36401	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g00330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g000500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g00330

Limit To All Plant Sequences

>Glyma18g00330.1   sequence type=CDS   gene model=Glyma18g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAAGTCAGAAAGAAGACTCGAGGTTCTGCCAAGGAGATGGGGGTTGCTACCCATTTGCCAATCAAGGTTATTGAATCATCCAACCCGACTGTCGAGTCTTTTGATGAGGTTGCAAAAGAGACAAATTCTTGCCCTCATCTTGTAAAAGGGGTTAATTTTGACAGGTTGTCCACTAAGGTTGGCTCTTCTGGATCCATTAGGTGTGAAGATTGTAGGGAAGGTGCGACTAATAGAAGGAGCGGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGGTGCATCATTAGATTCAAAATCTGAGTCAAAATCTATATGGGTTTGTTTGGAGTGTGGTCAATATACCTGTGGAGGCGTGGGGCTACCAATAACCCCTCACTGCCATGTGGTAGGGCATGCAAGGAAAAACCGGCACCCCTTGGTGGTTCATTTTGATAAGCCCCAACTGTGTTGGTGTTTTCCTTGCAACATGCTTATTCAAGTTGATAAAATTGAAAAAACTGATGAATCAGGTCATCTTCTATCTGATGTTGTGAAATTGTTGAAAGGACGATCACAAGAAAAATCTTCAGTGGATATTGAGGATGTTTCCGTTGGGGATGGCGGTAGTATTACTTCAGAAATTAACTCAAGGGCTCTGTTTGCAAATGATTCATATGGACAAGGTGGTTATGTAGTTAGAGGTATGATTAATCTTGGGAATACTTGCTTCTTCAATTCAATTATGCAAAATCTGCTGGCTATGAATAGATTGCGGGACAACTTTCTTAAGTTAGATGCTCCTGTTGGGCCACTTATTAGTTCCTTGAAGAAGCTTTTCACTGAAACAAACCCTGAATCAGGATTGAAAAATGTTATAAATCCTAGATCTTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAGCATGACAGTCACGAATTGCTCCGTTGTTTACTGGATGGGTTAAGTACTGAAGAACTAGCCGGAAGGAAACAGAATGGTTCTCCCAAAAGAGATGGAACCTCTTCCAATACTTTAGTTGATGCTTTATTCGGGGGTCTGATATCTAGTACTGTATGTTGCATAGAGTGTGGGCATTTCTCAACAGTGTATGAACCTTTCTTAGATCTTTCTCTGCCCGTTCCAACTAAGAAACCTCCACCTCGCAAGGCCCAACAAGAACCCCGAACCAAAAAAGCTAAACTTCCACCAAAAAAAGGTGGAAAGATTCGAGTCAGAGTTAACAGGGATACTGATTCCTTACCTGTTCAAACTCAATCAAACCAATTATCCAGCCCCGAATCATCTTGCCTTGATCAGTCCATTATATCAGTTGCTGGAGAGATGGGGACTTGTTCTGCTGATTCTACATTATTAGTTTCTGAAGAAATAAAAAGTGTAGCTGATAAAGAGGACTTGTCTTCACCTAATTTGGTTACTGCTGGAGAGTCTCAACATACACAAGTGATTGACAATGGTGCAATGAAAACATTAGACGAATTTTCATGGTTGGATTATGTGGAAGCTGGAGCAAATGAATGTGATTTCATTTCCCAAAAGGAGGATGCTCCAGAGGTACAGGATACTGAGAGCAAAGATGAATGTTTAAATGAATTGCATGGACAGGCCACCTGTGAATCTAGTGGTCCTGTTTGTTTCCTTAAGGAGGATCAAAACCTAAGTCCCACATTTTCTTCAGCAAATGGGTGGGAAGACGAGGTTCCATTACAAGTTCAAGGTTCAGAAGTCCTGTTACTTCCATACAAAGAAGAAAGTTCCTCTGCTGCTGAGATCATTGGAGGAGATGGTGAGGGCTCCTCATCTGTTTTGGGTGGTGGTCAAGAAGAATTGGAGTTTGATGGCTTTGGTGACTTATTCAATGAGCCTGAAGTTGTTGCTGGGCCTGCTCCTAGACCATCTTCATGTAGTGAGGTTATGGAAGCTGGTTTTATCATTGGAAGCAACAGTGAGTCTGATCCAGATGAAGTAGATGATACAGATTCTCCTGTCTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCCGAGCTTCTCTCGGATGAAAATGCCTGGCATTGTGAGAACTGTTCAAAAGTTCTCCAACATCAAAAGATGGAAGAAAAAAAGCAGGCAAGAGCTGTATCTGATAGAAATGAGACTGGAATTCATGATGAACCATGGCATGCAGTTAACTCTTGTTCTGTTAAAGTCAGAACCATTGGAAATGGGGACATAAAAAATGACCAAAACGTACAAAATTTGGTTGCATGTGATAAACACAAAACAAATCTTGAAAATGGTCAAAGAGATGAGCTTAGTTTAATTGTTAATGAAAAGGATAGTGGATCATTTGAAATGGAAGATACACATAATGATGAATTACAGTCTTCAAGTTTTCATAATACTTGCAATGAAGAAAGCTGTAGTCATTTAGCTGTTGATTCTTGTGTTACTGAAAATGTCCAAAGAAGAGATTCTCCGATGATAGGTAGTGATAACAATGACTCAGAAGAGGCTGACTCCAAAAGTGTGAAAGTGAAGAGGGATGCAACTAAGAGGGTCCTCATTTATAAAGCGCCTCCTGTCTTGACCATTCACTTGAAGAGATTCAGCCAAGATGCCCGTGGGCGCTTAAGTAAATTAAATGGCCATGTCAATTTCAGAGAAACAATGGATATTAGACCCTATATTGATCCCAGGTGCATAAATGAAGAGAAGTATGCATACCACTTGGTTGGCTTAGTGGAGCACTCCGGAACTATGAGAGGGGGTCACTATGTTGCGTATGTGAGAGGGGGCCAGAGGAACTGTGGGAAGGGTGATAAAGAGAATGAGGGTTCCACATGGTATCAGGCAAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTACGAAAAAATTTGA

Predicted protein sequences of Glyma18g00330

Limit To All Plant Sequences

>Glyma18g00330.1   sequence type=predicted peptide   gene model=Glyma18g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKVRKKTRGSAKEMGVATHLPIKVIESSNPTVESFDEVAKETNSCPHLVKGVNFDRLSTKVGSSGSIRCEDCREGATNRRSGKGKGKHGKKKGGASLDSKSESKSIWVCLECGQYTCGGVGLPITPHCHVVGHARKNRHPLVVHFDKPQLCWCFPCNMLIQVDKIEKTDESGHLLSDVVKLLKGRSQEKSSVDIEDVSVGDGGSITSEINSRALFANDSYGQGGYVVRGMINLGNTCFFNSIMQNLLAMNRLRDNFLKLDAPVGPLISSLKKLFTETNPESGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSPKRDGTSSNTLVDALFGGLISSTVCCIECGHFSTVYEPFLDLSLPVPTKKPPPRKAQQEPRTKKAKLPPKKGGKIRVRVNRDTDSLPVQTQSNQLSSPESSCLDQSIISVAGEMGTCSADSTLLVSEEIKSVADKEDLSSPNLVTAGESQHTQVIDNGAMKTLDEFSWLDYVEAGANECDFISQKEDAPEVQDTESKDECLNELHGQATCESSGPVCFLKEDQNLSPTFSSANGWEDEVPLQVQGSEVLLLPYKEESSSAAEIIGGDGEGSSSVLGGGQEELEFDGFGDLFNEPEVVAGPAPRPSSCSEVMEAGFIIGSNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKVLQHQKMEEKKQARAVSDRNETGIHDEPWHAVNSCSVKVRTIGNGDIKNDQNVQNLVACDKHKTNLENGQRDELSLIVNEKDSGSFEMEDTHNDELQSSSFHNTCNEESCSHLAVDSCVTENVQRRDSPMIGSDNNDSEEADSKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDIRPYIDPRCINEEKYAYHLVGLVEHSGTMRGGHYVAYVRGGQRNCGKGDKENEGSTWYQASDAYVREVSLDEVLRCEAYILFYEKI*

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