Glyma18g00300 - SoyBase

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Report for Sequence Feature Glyma18g00300

Feature Type:	gene_model
Chromosome:	Gm18
Start:	47147
stop:	49595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g00300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56340	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:22818254-22819444 FORWARD LENGTH=396	SoyBase	E_val: 4.00E-117	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22763	Panther	RING ZINC FINGER PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7J9L6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7J9L6_MEDTR	SoyBase	E_val: 2.00E-163	ISS
UniRef100_I1MY79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY79_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g00300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g00300 not represented in the dataset	Glyma18g00300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g00300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g000200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g00300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g00300

Limit To All Plant Sequences

>Glyma18g00300.5   sequence type=transcript   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTAAAGTAAAACGTGTAAGTTGAAGAAACGACAAAACGCAATTGGGATAGGACGGTTCTTCTTCGGTACGAGAGGAGGATTTTCTCGCACCCAAAACCAGCATGTGAAATCGAAAAGGGCTCTTCGTTGAATTTGGTAGGTTTTCATTCACTCTCAAATCTCAAACTTTTACAATACAATTTCACGGGATAATAATTATTTATTGTGCAATTGTCCTTCTGTTTTATAAATTTAGATTGCGTGTCAAATATGTTATATGATCATGCCGCTTTGCAGTTTCTGCGGTAAGTTCCTTTCATTGTGCTGTTCGTCGTCAATATTATACGAGGGCGGTGATGTGTTCTCGTCATGCCAAATCGCTTCCAGATCCTTCTTTTAATTCTCTGAATTTTAATTATATTTTTACTTAACAATTCCTCTCAAGTCTCACCTACCGACCCGACTTATCTTTTAGCTGTTCATAAAACCCTTCTCCGACAACTTGTAGCTGCTGCTGCTGTTTCTCTTTCATTTTTTTTTTGCTAAGGACTCAAGGAATACAACATCCTGATATTTGGAGGACAGATTAAAGAGAAACATCGTGGAGGAAACAATGGCAGCAAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATATGGAAATCAGATGCCCGTTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACACCCCCAGTAGCAGCAGCATTCCCAATACATCAGAATCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCCTAGAAGACTCAGACAAATAGCCAATGATAATGGTAATCGTGATTATGTTGATGGTGTAGCAGATCATGGTAGAGAAACTGAATATGATCAAGAGTTTGAGTCCATCCTTCGGAGGAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAACTGGACTGGCATCTGAATCATATGAGAATACTGATGGCCATGACCATGACAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCACATGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTATGAGTCAAACCGGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGGGTGATTATTTCACAGGGCCGGGTTTCGATATATTGTTGCAACATTTGGCTGAGAATGATCCTAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTCATAATCAATGAGAATTCGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCCAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTTCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGCTTCAGTTGCCATTGGATGAGTCTAAGCAAGACTCTGATCTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGATGAAGAAAGAGATGGCGAAGGGAGAAATGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCAAACTCTTCATCCTCTTAAAGTTCCAATGCCAACGGAAATGATAATCAATCAGATGAAAACTGAGTATTTTTGCATATCTGTTGTGCTATTCATGTGCTGCCTTGCTTATGTACAGTTTTCGACCAATGAAAGAATCCAATGTTGATAGAACAATTTGTGATTTTTCTTGTGGCTTTGTTTTTGCTAAATTTTGTGCTTCTAGAATTCAGTTGCTATTTTTCTTCAACTTTTACCCTTAACTTGGCATTTGTATAATTCTCGTGGTGGTTTTATTTCCCCATCTTATCCTGTACTACTTTGGTATATGTACACTCGTGGGTGTGTGTGTGTGTTTTTTTCTAT

>Glyma18g00300.6   sequence type=transcript   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTAAAGTAAAACGTGTAAGTTGAAGAAACGACAAAACGCAATTGGGATAGGACGGTTCTTCTTCGGTACGAGAGGAGGATTTTCTCGCACCCAAAACCAGCATGTGAAATCGAAAAGGGCTCTTCGTTGAATTTGGACTCAAGGAATACAACATCCTGATATTTGGAGGACAGATTAAAGAGAAACATCGTGGAGGAAACAATGGCAGCAAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATATGGAAATCAGATGCCCGTTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACACCCCCAGTAGCAGCAGCATTCCCAATACATCAGAATCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCCTAGAAGACTCAGACAAATAGCCAATGATAATGGTAATCGTGATTATGTTGATGGTGTAGCAGATCATGGTAGAGAAACTGAATATGATCAAGAGTTTGAGTCCATCCTTCGGAGGAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAACTGGACTGGCATCTGAATCATATGAGAATACTGATGGCCATGACCATGACAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCACATGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTATGAGTCAAACCGGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGGGTGATTATTTCACAGGGCCGGGTTTCGATATATTGTTGCAACATTTGGCTGAGAATGATCCTAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTCATAATCAATGAGAATTCGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCCAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTTCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGCTTCAGTTGCCATTGGATGAGTCTAAGCAAGACTCTGATCTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGATGAAGAAAGAGATGGCGAAGGGAGAAATGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCAAACTCTTCATCCTCTTAAAGTTCCAATGCCAACGGAAATGATAATCAATCAGATGAAAACTGAGTATTTTTGCATATCTGTTGTGCTATTCATGTGCTGCCTTGCTTATGTACAGTTTTCGACCAATGAAAGAATCCAATGTTGATAGAACAATTTGTGATTTTTCTTGTGGCTTTGTTTTTGCTAAATTTTGTGCTTCTAGAATTCAGTTGCTATTTTTCTTCAACTTTTACCCTTAACTTGGCATTTGTATAATTCTCGTGGTGGTTTTATTTCCCCATCTTATCCTGTACTACTTTGGTATATGTACACTCGTGGGTGTGTGTGTGTGTTTTTTTCTAT

Coding sequences of Glyma18g00300

Limit To All Plant Sequences

>Glyma18g00300.4   sequence type=CDS   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATATGGAAATCAGATGCCCGTTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACACCCCCAGTAGCAGCAGCATTCCCAATACATCAGAATCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCCTAGAAGACTCAGACAAATAGCCAATGATAATGGTAATCGTGATTATGTTGATGGTGTAGCAGATCATGGTAGAGAAACTGAATATGATCAAGAGTTTGAGTCCATCCTTCGGAGGAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAACTGGACTGGCATCTGAATCATATGAGAATACTGATGGCCATGACCATGACAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCACATGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTATGAGTCAAACCGGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGGGTGATTATTTCACAGGGCCGGGTTTCGATATATTGTTGCAACATTTGGCTGAGAATGATCCTAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTCATAATCAATGAGAATTCGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCCAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTTCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGCTTCAGTTGCCATTGGATGAGTCTAAGCAAGACTCTGATCTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGATGAAGAAAGAGATGGCGAAGGGAGAAATGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCAAACTCTTCATCCTCTTAA

>Glyma18g00300.5   sequence type=CDS   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATATGGAAATCAGATGCCCGTTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACACCCCCAGTAGCAGCAGCATTCCCAATACATCAGAATCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCCTAGAAGACTCAGACAAATAGCCAATGATAATGGTAATCGTGATTATGTTGATGGTGTAGCAGATCATGGTAGAGAAACTGAATATGATCAAGAGTTTGAGTCCATCCTTCGGAGGAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAACTGGACTGGCATCTGAATCATATGAGAATACTGATGGCCATGACCATGACAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCACATGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTATGAGTCAAACCGGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGGGTGATTATTTCACAGGGCCGGGTTTCGATATATTGTTGCAACATTTGGCTGAGAATGATCCTAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTCATAATCAATGAGAATTCGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCCAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTTCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGCTTCAGTTGCCATTGGATGAGTCTAAGCAAGACTCTGATCTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGATGAAGAAAGAGATGGCGAAGGGAGAAATGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCAAACTCTTCATCCTCTTAA

>Glyma18g00300.6   sequence type=CDS   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAAGGTATTGGTGTCACATGTGCTCTCAAATGGTCAATCCCATCATGGATATGGAAATCAGATGCCCGTTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACACCCCCAGTAGCAGCAGCATTCCCAATACATCAGAATCTGATTTTGAATCTGATCGGGCTCTCTCCCTTTGGGCGCCCATCTTGCTAGGCATGATGGGCAATCCACGTCATCCTAGAAGACTCAGACAAATAGCCAATGATAATGGTAATCGTGATTATGTTGATGGTGTAGCAGATCATGGTAGAGAAACTGAATATGATCAAGAGTTTGAGTCCATCCTTCGGAGGAGGAGAAACTCAGCTACCATTCTACAATTGCTCCAAGGTATAAGAACTGGACTGGCATCTGAATCATATGAGAATACTGATGGCCATGACCATGACAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCACATGATCTTGATCAATCCTTTAAATCAGACTATTATTGTTCAAGGTTCCTATGAGTCAAACCGGGATCAAAGTGATAATCATAGCTCCGTTGGGTCCCTGGGTGATTATTTCACAGGGCCGGGTTTCGATATATTGTTGCAACATTTGGCTGAGAATGATCCTAATAGGTATGGAACTCCACCTGCTCAGAAGGAGGCCATTGAAGCGCTGCCTACCGTCATAATCAATGAGAATTCGCAGTGTTCTGTGTGTCTGGATGATTTTGAAGTTGGTTCTGAAGCCAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGGTGTATCCTTCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGCTTCAGTTGCCATTGGATGAGTCTAAGCAAGACTCTGATCTGTCAAGGGATAGCAGAAGCCAAAGGGAGGATGAAAGTATTGAACATGACAATGATGAAGAAAGAGATGGCGAAGGGAGAAATGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCAAACTCTTCATCCTCTTAA

Predicted protein sequences of Glyma18g00300

Limit To All Plant Sequences

>Glyma18g00300.4   sequence type=predicted peptide   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAARYWCHMCSQMVNPIMDMEIRCPFCQSGFVEEMGNTPSSSSIPNTSESDFESDRALSLWAPILLGMMGNPRHPRRLRQIANDNGNRDYVDGVADHGRETEYDQEFESILRRRRNSATILQLLQGIRTGLASESYENTDGHDHDREREREREREHMILINPLNQTIIVQGSYESNRDQSDNHSSVGSLGDYFTGPGFDILLQHLAENDPNRYGTPPAQKEAIEALPTVIINENSQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPLDESKQDSDLSRDSRSQREDESIEHDNDEERDGEGRNASGGRRFSFPWPFNGLFSSSNSSSS*

>Glyma18g00300.5   sequence type=predicted peptide   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAARYWCHMCSQMVNPIMDMEIRCPFCQSGFVEEMGNTPSSSSIPNTSESDFESDRALSLWAPILLGMMGNPRHPRRLRQIANDNGNRDYVDGVADHGRETEYDQEFESILRRRRNSATILQLLQGIRTGLASESYENTDGHDHDREREREREREHMILINPLNQTIIVQGSYESNRDQSDNHSSVGSLGDYFTGPGFDILLQHLAENDPNRYGTPPAQKEAIEALPTVIINENSQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPLDESKQDSDLSRDSRSQREDESIEHDNDEERDGEGRNASGGRRFSFPWPFNGLFSSSNSSSS*

>Glyma18g00300.6   sequence type=predicted peptide   gene model=Glyma18g00300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAARYWCHMCSQMVNPIMDMEIRCPFCQSGFVEEMGNTPSSSSIPNTSESDFESDRALSLWAPILLGMMGNPRHPRRLRQIANDNGNRDYVDGVADHGRETEYDQEFESILRRRRNSATILQLLQGIRTGLASESYENTDGHDHDREREREREREHMILINPLNQTIIVQGSYESNRDQSDNHSSVGSLGDYFTGPGFDILLQHLAENDPNRYGTPPAQKEAIEALPTVIINENSQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRLQLPLDESKQDSDLSRDSRSQREDESIEHDNDEERDGEGRNASGGRRFSFPWPFNGLFSSSNSSSS*

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