SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma18G40360): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma18G40360): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma18G40360

Feature Type:gene_model
Chromosome:Gm18
Start:48934999
stop:48936345
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53820AT Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein | chr3:19938706-19939134 FORWARD LENGTH=142 SoyBaseE_val: 8.00E-14ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR26374Panther FAMILY NOT NAMED JGI ISS
PTHR26374:SF89Panther TAC1 (TELOMERASE ACTIVATOR1), NUCLEIC ACID BINDING JGI ISS
UniRef100_A5JUQ4UniRef Annotation by Michelle Graham. Most informative UniRef hit: C2H2 zinc finger protein n=1 Tax=Glycine max RepID=A5JUQ4_SOYBN SoyBaseE_val: 2.00E-92ISS
UniRef100_I1N2L1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2L1_SOYBN SoyBaseE_val: 4.00E-131ISS

LocusGene SymbolProtein Name
NAB Nucleic Acids Binding protein

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18G40360 not represented in the dataset

Glyma18G40360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g16290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g185900 Wm82.a2.v1IGC As supplied by JGI
Glyma18g40360 Wm82.a1.v1.1IGC Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g40360.1   sequence type=CDS   gene model=Glyma18g40360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTATTGCAATTTCCCCTTCGCTTTGCAAACAAAGATGGAGTTCAATTCCCAAAACCCTAAAAAATCTGAGATAAGATGGAGCCCAGATAATCAAGGTGGTCCTGGACAAGGGAAGTCTTATTCTTGTTACTTTTGCAAGAGAGGGTTCTCAAATGCACAGGCCCTGGGAGGCCACATGAATATCCATAGAAAAGATAGGGCGGCAAAGCTCAAGCAATCTTCTGAGGAAAACTTGCTTTCATTGGATATCTCAATCAAGGCCACAAGTGATCATCCTAATGACCCTTCTGATTTCGAAGAGAAAATTTTGTTTCGGTTGGGTGCTGGTGAAGAGAAGCATCCTAGAAACCATAAATATCCATTCAATTTTTTTCCTCGCAAAGATGATCATCATGATCATGCACCACAAATTCCCCATCTTCCTTCTTTTGTTTTGGGGCAGATGGTTGAGGAGAAGAAAGCTGAATTAGACCTTGAGCTTAGGTTAGGGCTTCATCCTCGGGAGTCAGCAACATTGAACACTAGATCGTTCTTTTGA

>Glyma18g40360.1   sequence type=predicted peptide   gene model=Glyma18g40360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYCNFPFALQTKMEFNSQNPKKSEIRWSPDNQGGPGQGKSYSCYFCKRGFSNAQALGGHMNIHRKDRAAKLKQSSEENLLSLDISIKATSDHPNDPSDFEEKILFRLGAGEEKHPRNHKYPFNFFPRKDDHHDHAPQIPHLPSFVLGQMVEEKKAELDLELRLGLHPRESATLNTRSFF*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo