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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G76570 | AT | Annotation by Michelle Graham. TAIR10: Chlorophyll A-B binding family protein | chr1:28729132-28730754 FORWARD LENGTH=327 | SoyBase | E_val: 9.00E-170 | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0030076 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex | SoyBase | N/A | ISS |
| GO:0016168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding | SoyBase | N/A | ISS |
| PTHR21649 | Panther | CHLOROPHYLL A/B BINDING PROTEIN | JGI | ISS | |
| PF00504 | PFAM | Chlorophyll A-B binding protein | JGI | ISS | |
| UniRef100_B9H5X9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Light-harvesting complex II protein Lhcb7 n=1 Tax=Populus trichocarpa RepID=B9H5X9_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MY72 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY72_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g38220 not represented in the dataset |
Glyma17g38220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g262400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g38220.2 sequence type=transcript gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATCATTCAAGTGTAGAACTAGAAGGTAAAGAAGCAATTGACGTGAGCGGCCATCCATGGTTTCGCTTCATCCACATACACTAACACTAGCGTGCCCTTTGTCCGTTTCCTCTTCATCCTCCCGTTTTCTCAGATGCTCCGTAAATTCTGCCCCGAAGCGAAGAAGAAGCAGCTTCATTACTGCTTCGTGGCAAGAGCTCGCGGGAGTTTTACTATTCTCCGCGATTCCTTTCACTGCCGTGAAAGCTATAGCTAATAGTCCGCTAGGGGAGTCGCTTCAGAGGAAAATGGAGGAGAGAAAGACATTTGCTGTAGAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCAGTGTGGTGGCGTGTTGGATATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGTATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATAAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAGGCAGCACTGACGGGCAAAGGTCCTGTACAGAATCTTATTGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGCTCCCTCAACTTCATTAAAGTGGTCATGTAATATCAGAAAGGAATCTACATCCATTCGGTTGCTCTTTTCTACGTTTTGCTGAGGGAATTCTGGTAAGAACGGTATAGCCATCAGCCATGTACCCTTCGCATTCTATTGTCAAATCTCTATAAAAGAAACTATTCTTAAGAATTACTACTAATTATGTCATTCTATTCCTAAAAACACCACAATTACGTCACTCAATCCTAATTCTAGACCAATTTCAATAGTTATTTGTTGATTTTTTTGGGTAGATATTTCAAAAG >Glyma17g38220.3 sequence type=transcript gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGGTCAGGATCTCTTGAATACCATGAGCACTAATGTAATTCATATCTGGCTGTTATCAGAGAATTGTACTAGAAAATAATTTAGAGACAAAAAGAGCTTCAGATTGTCATTTCATTACATGATTATTATTCTCACTGTTGCTTGTGTGTCCAAATTTTATGCTTATTTCGTTAAACATTCACTAATTTTCAGCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCAGTGTGGTGGCGTGTTGGATATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGTATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATAAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAGGCAGCACTGACGGGCAAAGGTCCTGTACAGAATCTTATTGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGCTCCCTCAACTTCATTAAAGTGGTCATGTAATATCAGAAAGGAATCTACATCCATTCGGTTGCTCTTTTCTACGTTTTGCTGAGGGAATTCTGGTAAGAACGGTATAGCCATCAGCCATGTACCCTTCGCATTCTATTGTCAAATCTCTATAAAAGAAACTATTCTTAAGAATTACTACTAATTATGTCATTCTATTCCTAAAAACACCACAATTACGTCACTCAATCCTAATTCTAGACCAATTTCAATAGTTATTTGTTGATTTTTTTGGGTAGATATTTCAAAAG
>Glyma17g38220.1 sequence type=CDS gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCGCTTCATCCACATACACTAACACTAGCGTGCCCTTTGTCCGTTTCCTCTTCATCCTCCCGTTTTCTCAGATGCTCCGTAAATTCTGCCCCGAAGCGAAGAAGAAGCAGCTTCATTACTGCTTCGTGGCAAGAGCAGCTCGCGGGAGTTTTACTATTCTCCGCGATTCCTTTCACTGCCGTGAAAGCTATAGCTAATAGTCCGCTAGGGGAGTCGCTTCAGAGGAAAATGGAGGAGAGAAAGACATTTGCTGTAGAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCAGTGTGGTGGCGTGTTGGATATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGTATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATAAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAGGCAGCACTGACGGGCAAAGGTCCTGTACAGAATCTTATTGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGCTCCCTCAACTTCATTAAAGTGGTCATGTAA >Glyma17g38220.2 sequence type=CDS gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCGCTTCATCCACATACACTAACACTAGCGTGCCCTTTGTCCGTTTCCTCTTCATCCTCCCGTTTTCTCAGATGCTCCGTAAATTCTGCCCCGAAGCGAAGAAGAAGCAGCTTCATTACTGCTTCGTGGCAAGAGCTCGCGGGAGTTTTACTATTCTCCGCGATTCCTTTCACTGCCGTGAAAGCTATAGCTAATAGTCCGCTAGGGGAGTCGCTTCAGAGGAAAATGGAGGAGAGAAAGACATTTGCTGTAGAAAACTCGTCTACATTCAAGGCCTTAGCCGGCAAGGCCCGAAAGGAGAGCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCAGTGTGGTGGCGTGTTGGATATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGTATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATAAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAGGCAGCACTGACGGGCAAAGGTCCTGTACAGAATCTTATTGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGCTCCCTCAACTTCATTAAAGTGGTCATGTAA >Glyma17g38220.3 sequence type=CDS gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTATTATTCTCACTGTTGCTTGTGTGTCCAAATTTTATGCTTATTTCGTTAAACATTCACTAATTTTCAGCTTTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATTTCATATGAATACCCATCATATCTTACTGGGGAACTGCCCGGGGATTACGGCTTTGACATTGCTGGGCTTGGCCAGGATCCTGTGGCACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCCGTCGGTGCTCTGATTCCTGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTAGAACCAGTGTGGTGGCGTGTTGGATATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGTATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCTGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATAAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAGGCAGCACTGACGGGCAAAGGTCCTGTACAGAATCTTATTGATCACATCTCTGATCCTTTCCACAACAACTTGCTGGGCTCCCTCAACTTCATTAAAGTGGTCATGTAA
>Glyma17g38220.1 sequence type=predicted peptide gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSLHPHTLTLACPLSVSSSSSRFLRCSVNSAPKRRRSSFITASWQEQLAGVLLFSAIPFTAVKAIANSPLGESLQRKMEERKTFAVENSSTFKALAGKARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLLGSLNFIKVVM* >Glyma17g38220.2 sequence type=predicted peptide gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSLHPHTLTLACPLSVSSSSSRFLRCSVNSAPKRRRSSFITASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEERKTFAVENSSTFKALAGKARKESFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLLGSLNFIKVVM* >Glyma17g38220.3 sequence type=predicted peptide gene model=Glyma17g38220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIIILTVACVSKFYAYFVKHSLIFSFWYGEDRPRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLLGSLNFIKVVM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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