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Report for Sequence Feature Glyma17g38000
Feature Type: gene_model
Chromosome: Gm17
Start: 41723843
stop: 41729183
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g38000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G20200 AT
Annotation by Michelle Graham. TAIR10: PAM domain (PCI/PINT associated module) protein | chr1:7001409-7004154 REVERSE LENGTH=488
SoyBase E_val: 0 ISS
GO:0006511 GO-bp
Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0042023 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication
SoyBase N/A ISS
GO:0042176 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of protein catabolic process
SoyBase N/A ISS
GO:0043161 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0043248 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasome assembly
SoyBase N/A ISS
GO:0051510 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth
SoyBase N/A ISS
GO:0051788 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to misfolded protein
SoyBase N/A ISS
GO:0080129 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly
SoyBase N/A ISS
GO:0000502 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0008541 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0030234 GO-mf
Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity
SoyBase N/A ISS
KOG2581
KOG
26S proteasome regulatory complex, subunit RPN3/PSMD3
JGI ISS
PTHR10758 Panther
26S PROTEASOME REGULATORY SUBUNIT S3
JGI ISS
PTHR10758:SF2 Panther
26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3
JGI ISS
PF01399 PFAM
PCI domain
JGI ISS
PF08375 PFAM
Proteasome regulatory subunit C-terminal
JGI ISS
UniRef100_G7J5U6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7J5U6_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MY55 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MY55_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g38000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g38000
Paralog Evidence Comments
Glyma14g40130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g38000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g260500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g38000
Transcripts of Glyma17g38000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g38000.3 sequence type=transcript gene model=Glyma17g38000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAACGCTTCCTTAAACTTGTCTTCTTTTCTTAAAATAAAAGCGTAAAGAAGAAGAAAAGTATCGTGCGTTTAGCTTAGGAAGATGAGGCTGCATACTCTTGTGTGACCAAAAAGATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGATAATGACTTGCTCTTTTTTATATTGCCAGTTGTTGTCAGGATCTCTTTATTTCCTATATTTGCTGCTCATATTTCTGCATTCGAGAACTTCCATTACCATTTCCTTTTTGGAGCGCCAAGTTTTATTTTCTACACCAAAGTTATCTGTAAATCCTTTTGCCTTATTGAGATATTTACTGTTAATTACATTTACAGATCATGGCGACACCGAGTATTTGTTTCCTGTTCGGTGAACTATGTTTTGGGATTTGAGTAAACTAATCAATTATCTAGGACCGTGTTAGTGATTCAGTTCTAAAGTTTGACTATTG
Coding sequences of Glyma17g38000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g38000.2 sequence type=CDS gene model=Glyma17g38000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA
>Glyma17g38000.3 sequence type=CDS gene model=Glyma17g38000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTGAAGACGTGGAGATGAAAGATCAGGCAACGCCTTCACACTCGCTTTCTTCAGTTCCTCCATCTGCATTGCAGCATTTGAAGGAAATAGCATCAATTATTGAAACCGGTTCGTACTCAAAGGAAGTTCGTCGAATTGCTCGTGCCCTGCGCCTTACATTTGCATTGAGGCGTAAATTGACAGCACCAGTTCTCTCATCTTTCCTCGATTATGTTCTTCCTCCCGCTTCTGAACCTCACACTAGGTTATCCTCTTTTCTCCCTAATCCTAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTTCAACATCTACTATTCAAACCCCGGCGGCAAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTGATCGACCAGAAAAGATACGACACGGCCAAAGCTTGTTCCTCAGCAAGCATTGTTCGGCTGAAGAGCCTGAATAGAAGAACTGTCAATGTTATTGCATCCAGACTGTACTTTTATTACTCATATAGCTATGAGCTCACTGGAAATCTTGCTGAAATTCGAGGTAACCTCCTTGCATTGCACCGGATTGCTACCCTGCGCCATGATGAGCTGGGTCAGGAAACCCTTCTGAATCTGTTACTTCATAACTACCTACACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCTAAGGCTCCACGTTTTGAGGCACATTCAAACCAGCAGTTCTGCCGTTATCTCTTCTACCTTGGGAAAATTCGCACAATTCAGCTGGAGTACACCGATGCAAAAGACTTGCTCTTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACAGGGTTTTCAGATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTGTTATTGGGAGAAATACCTGAGAGGATAATCTTTATGCATAGAGGAATGGAGAAATCTTTGAGGCCTTACTTTGAGCTTACTAATGCTGTCCGGATTGGTGACTTGGAGCTATTTAGGAATGCTACAGAGAAGTTTGGTACGACTTTCAGTAGAGACCGAACTCATAATTTGATTGTTCGGCTCCGTCATAATGTCATCCGGACTGGTTTACGCAACATCAGCATATCATATTCACGCATCTCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCAAGTCCTGTTGCTGACTCTGAGAGCATTGTAGCAAAGGCTATCCGTGATGGGGCCATTGATGCTTCATTGGATCATGCCAATGGGTGGATGGTATCCAAGGGAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCCTTAATTCTCGGATTGCCTTTTGTCTTAACATGTACAATGAGGCTGTTCGAGCACTGCGTTTTCCACCAAACAAAGACAAGGAAAAGGAAAATGCTGAGAAGAGGAGAGAGAGGCATCAACAAGAGCAAGAATTGGCTAAGCATATCGCAGAGGAAGATGATGATGACTTCTGA
Predicted protein sequences of Glyma17g38000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g38000.2 sequence type=predicted peptide gene model=Glyma17g38000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEDVEMKDQATPSHSLSSVPPSALQHLKEIASIIETGSYSKEVRRIARALRLTFALRRKLTAPVLSSFLDYVLPPASEPHTRLSSFLPNPKEGDREMEVDSSTSTIQTPAAKHLLPELEIYCYLLVLLFLIDQKRYDTAKACSSASIVRLKSLNRRTVNVIASRLYFYYSYSYELTGNLAEIRGNLLALHRIATLRHDELGQETLLNLLLHNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKDLLLQAARKAPSAAQGFQIQCNKWAVIVRLLLGEIPERIIFMHRGMEKSLRPYFELTNAVRIGDLELFRNATEKFGTTFSRDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADSESIVAKAIRDGAIDASLDHANGWMVSKGTGDIYSTNEPQLALNSRIAFCLNMYNEAVRALRFPPNKDKEKENAEKRRERHQQEQELAKHIAEEDDDDF*
>Glyma17g38000.3 sequence type=predicted peptide gene model=Glyma17g38000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEDVEMKDQATPSHSLSSVPPSALQHLKEIASIIETGSYSKEVRRIARALRLTFALRRKLTAPVLSSFLDYVLPPASEPHTRLSSFLPNPKEGDREMEVDSSTSTIQTPAAKHLLPELEIYCYLLVLLFLIDQKRYDTAKACSSASIVRLKSLNRRTVNVIASRLYFYYSYSYELTGNLAEIRGNLLALHRIATLRHDELGQETLLNLLLHNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKDLLLQAARKAPSAAQGFQIQCNKWAVIVRLLLGEIPERIIFMHRGMEKSLRPYFELTNAVRIGDLELFRNATEKFGTTFSRDRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADSESIVAKAIRDGAIDASLDHANGWMVSKGTGDIYSTNEPQLALNSRIAFCLNMYNEAVRALRFPPNKDKEKENAEKRRERHQQEQELAKHIAEEDDDDF*