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Report for Sequence Feature Glyma17g37980

Feature Type:gene_model
Chromosome:Gm17
Start:41716206
stop:41716951
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g37980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42180AT Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317 SoyBaseE_val: 4.00E-57ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
PF00141PFAM Peroxidase JGI ISS
UniRef100_G7I8C1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase n=1 Tax=Medicago truncatula RepID=G7I8C1_MEDTR SoyBaseE_val: 2.00E-67ISS
UniRef100_UPI000233EA9EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EA9E related cluster n=1 Tax=unknown RepID=UPI000233EA9E SoyBaseE_val: 3.00E-88ISS

Expression Patterns of Glyma17g37980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g37980 not represented in the dataset
Glyma17g37980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g37980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g37980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g37980
>Glyma17g37980.2   sequence type=CDS   gene model=Glyma17g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAACAACCATACACTCGTAACAACTCCAAGTTTCCCGTGTCACCGCCTCGTCTCTACAAATACCATTCTCGTTAATGTGAATAGAAATATGGCAGCTATTGCTACAGTTATTATGCTCATAACTATGTCCCTGGCTTCTCTTGTGAGTGCACTAAATGTAAATTACTATGAAAATACGTGCCCCCATAATGTAGATTCCATTGTAGCTGCTGCTGTTCACAAAGCAACCATGAATGACAGAACTGTCCCAGCTGCTCTCCTTCGGATGCATTTTCATGATTGCTTCATAAGGGGTTGTGATGCCTCTGTACTTCTGGAATCAAAAGGTAAGAATAAAGCAGAAAAGGATGGACCTCCTAACATTTCTTTGCATGCATTCTATGTCATTGACAATGCTAAGAAAGCAGTGGAAGCCGTTTTCCCCGGGATCGTATCTTGTGCTGATATTTTGGCTCTTGCTGCTAGGGATGCTGTTGCCCTTGTTAGTGTCTCAAACAATTGCATATAA
Predicted protein sequences of Glyma17g37980
>Glyma17g37980.2   sequence type=predicted peptide   gene model=Glyma17g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNNHTLVTTPSFPCHRLVSTNTILVNVNRNMAAIATVIMLITMSLASLVSALNVNYYENTCPHNVDSIVAAAVHKATMNDRTVPAALLRMHFHDCFIRGCDASVLLESKGKNKAEKDGPPNISLHAFYVIDNAKKAVEAVFPGIVSCADILALAARDAVALVSVSNNCI*






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