SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G39330 | AT | Annotation by Michelle Graham. TAIR10: cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360 | SoyBase | E_val: 4.00E-149 | ISS |
| GO:0009809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| GO:0045551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cinnamyl-alcohol dehydrogenase activity | SoyBase | N/A | ISS |
| KOG0023 | KOG | Alcohol dehydrogenase, class V | JGI | ISS | |
| PTHR11695 | Panther | ALCOHOL DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11695:SF285 | Panther | QUINONE OXIDOREDUCTASE-RELATED | JGI | ISS | |
| PF00107 | PFAM | Zinc-binding dehydrogenase | JGI | ISS | |
| PF08240 | PFAM | Alcohol dehydrogenase GroES-like domain | JGI | ISS | |
| UniRef100_B9R8D9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9R8D9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MY52 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY52_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g37960 not represented in the dataset |
Glyma17g37960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g40170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g260100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37960.2 sequence type=transcript gene model=Glyma17g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTCGCTTTTACTTTCTCTTTCTCTGTGGGCTCTCTTTCTTATTCTTGTCCGTTTTTGTTCCTTGTTCTTAGGAAGGATATGCTATATCCTGAGGAATTTGTGCACTATGCGAATAAATCCTTAAGGACAGTGTGTCTAACATACGTCTCGGTTCTGTCTCTCGCATACTCTTACCTTGACGATTCTGCACCAGTCAATAACCATGAATAATATTCTCTTCTCTCACGTTTAAACATGGAGAAGTCAAGAAAAAAAAAGAATAACGTTCGAACTTTGATAACAGAGGGATTGTTTTATGTGGAGCAAAGGATTGGTTTAATTTTTTTTCGAACAATCTAAGGTGGGAGAGGATGTTTAGGCTTCAATTGTTATGGCTGAGAGCAGAGCGAATCACACAGTGAGCGTATCTGGGTGGGCAGCTCATGATTCGTCGGGCAAGATTACCCCCTACAGCTTCAAAAGACGGCAGAACGGTGTGAACGATGTGACAATAAAGATCCTCTATTGTGGGATCTGCCACACGGATCTCCACTGTGCTAAAAATGAATGGGGCATCACTATGTACCCTGTGGTACCCGGACACGAGATCATTGGGGAGGTAACTAAGGTTGGGACCAATGTGAAGGGGTTCATGGAAGGAGACAGAGTGGGTGTGGGCTGTTTGGCGGCTTCATGCTTGGAATGTCACCACTGCAAGACCGATCAGGAAAACTACTGCCAAGACCTCCAATTTGTCTACAATGGAATCTTCTGGGATGGCACCATCACCTATGGTGGCTACTCCCAAATCTTTGTCGCGGATTACAGATATGTGGTACACATTCCGGCAAGCCTACCAATGGATGCGGCGGCTCCTCTGCTATGCGCAGGAATAACAGTGTTCAGTCCTTTGAAAGAGCACGATTTGGTAGCAACAGCGGGGAAGAGGATTGGGGTGGTTGGACTGGGAGGCCTTGGACACATTGCTGTTAAATTTGGCAAGGCTTTTGGCCACCATGTTACCGTCATCAGCACTTCTCCCTCCAAAGAACCAGAAGCTAAGCAGCGTTTGGGTGCTGATCACTTCATTCTCAGCTCTAATCCTAAACAATTACAGGCTGCAAGGAGAAGCATGGATTTCATATTGGACACTGTTTCGGCAGAGCACTCTCTCTTGCCTATTTTGGAATTGCTCAAAGTCAATGGAACCTTATTTCTCGTGGGTGCACCAGACAAGCCTTTACAATTGCCTGCTTTCCCATTGATATTTGGCAAGAGATCAGTGAAAGGTGGGATCATAGGGGGAATAAAAGAGACGCAGGAAATGTTGGAGGTTTGTGCAAAGTACAATATAACGAGTGACATTGAGTTAATCACACCAGACAAAATCAACGAGGCTATGGAGCGCCTTGCTAAGAATGATGTGCGCTACCGTTTCGTCATTGATATTGCTAATGCTGTCACTTCCAACAACAACTGAACTAGCCTTCAATTTGATTCAAATTTCGTCTATTCATTACTTGTTTCTATATCTACTGTTTAGTAAACCGGTAATTTTACCTCTGCAATTGGATCACTAAGTCATATATTTATCCCAATTATCTTCTGTTTAAGTTTGAATTAAGAGAAAAATGGTTATGCATTTAAGATATTTTTTAAGTT
>Glyma17g37960.1 sequence type=CDS gene model=Glyma17g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGAGAGCAGAGCGAATCACACAGTGAGCGTATCTGGGTGGGCAGCTCATGATTCGTCGGGCAAGATTACCCCCTACAGCTTCAAAAGACGGCAGAACGGTGTGAACGATGTGACAATAAAGATCCTCTATTGTGGGATCTGCCACACGGATCTCCACTGTGCTAAAAATGAATGGGGCATCACTATGTACCCTGTGGTACCCGGACACGAGATCATTGGGGAGGTAACTAAGGTTGGGACCAATGTGAAGGGGTTCATGGAAGGAGACAGAGTGGGTGTGGGCTGTTTGGCGGCTTCATGCTTGGAATGTCACCACTGCAAGACCGATCAGGAAAACTACTGCCAAGACCTCCAATTTGTCTACAATGGAATCTTCTGGGATGGCACCATCACCTATGGTGGCTACTCCCAAATCTTTGTCGCGGATTACAGATATGTGGTACACATTCCGGCAAGCCTACCAATGGATGCGGCGGCTCCTCTGCTATGCGCAGGAATAACAGTGTTCAGTCCTTTGAAAGAGCACGATTTGGTAGCAACAGCGGGGAAGAGGATTGGGGTGGTTGGACTGGGAGGCCTTGGACACATTGCTGTTAAATTTGGCAAGGCTTTTGGCCACCATGTTACCGTCATCAGCACTTCTCCCTCCAAAGAACCAGAAGCTAAGCAGCGTTTGGGTGCTGATCACTTCATTCTCAGCTCTAATCCTAAACAATTACAGGCTGCAAGGAGAAGCATGGATTTCATATTGGACACTGTTTCGGCAGAGCACTCTCTCTTGCCTATTTTGGAATTGCTCAAAGTCAATGGAACCTTATTTCTCGTGGGTGCACCAGACAAGCCTTTACAATTGCCTGCTTTCCCATTGATATTTGGCAAGAGATCAGTGAAAGGTGGGATCATAGGGGGAATAAAAGAGACGCAGGAAATGTTGGAGGTTTGTGCAAAGTACAATATAACGAGTGACATTGAGTTAATCACACCAGACAAAATCAACGAGGCTATGGAGCGCCTTGCTAAGAATGATGTGCGCTACCGTTTCGTCATTGATATTGCTAATGCTGTCACTTCCAACAACAACTGA >Glyma17g37960.2 sequence type=CDS gene model=Glyma17g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGAGAGCAGAGCGAATCACACAGTGAGCGTATCTGGGTGGGCAGCTCATGATTCGTCGGGCAAGATTACCCCCTACAGCTTCAAAAGACGGCAGAACGGTGTGAACGATGTGACAATAAAGATCCTCTATTGTGGGATCTGCCACACGGATCTCCACTGTGCTAAAAATGAATGGGGCATCACTATGTACCCTGTGGTACCCGGACACGAGATCATTGGGGAGGTAACTAAGGTTGGGACCAATGTGAAGGGGTTCATGGAAGGAGACAGAGTGGGTGTGGGCTGTTTGGCGGCTTCATGCTTGGAATGTCACCACTGCAAGACCGATCAGGAAAACTACTGCCAAGACCTCCAATTTGTCTACAATGGAATCTTCTGGGATGGCACCATCACCTATGGTGGCTACTCCCAAATCTTTGTCGCGGATTACAGATATGTGGTACACATTCCGGCAAGCCTACCAATGGATGCGGCGGCTCCTCTGCTATGCGCAGGAATAACAGTGTTCAGTCCTTTGAAAGAGCACGATTTGGTAGCAACAGCGGGGAAGAGGATTGGGGTGGTTGGACTGGGAGGCCTTGGACACATTGCTGTTAAATTTGGCAAGGCTTTTGGCCACCATGTTACCGTCATCAGCACTTCTCCCTCCAAAGAACCAGAAGCTAAGCAGCGTTTGGGTGCTGATCACTTCATTCTCAGCTCTAATCCTAAACAATTACAGGCTGCAAGGAGAAGCATGGATTTCATATTGGACACTGTTTCGGCAGAGCACTCTCTCTTGCCTATTTTGGAATTGCTCAAAGTCAATGGAACCTTATTTCTCGTGGGTGCACCAGACAAGCCTTTACAATTGCCTGCTTTCCCATTGATATTTGGCAAGAGATCAGTGAAAGGTGGGATCATAGGGGGAATAAAAGAGACGCAGGAAATGTTGGAGGTTTGTGCAAAGTACAATATAACGAGTGACATTGAGTTAATCACACCAGACAAAATCAACGAGGCTATGGAGCGCCTTGCTAAGAATGATGTGCGCTACCGTTTCGTCATTGATATTGCTAATGCTGTCACTTCCAACAACAACTGA
>Glyma17g37960.1 sequence type=predicted peptide gene model=Glyma17g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESRANHTVSVSGWAAHDSSGKITPYSFKRRQNGVNDVTIKILYCGICHTDLHCAKNEWGITMYPVVPGHEIIGEVTKVGTNVKGFMEGDRVGVGCLAASCLECHHCKTDQENYCQDLQFVYNGIFWDGTITYGGYSQIFVADYRYVVHIPASLPMDAAAPLLCAGITVFSPLKEHDLVATAGKRIGVVGLGGLGHIAVKFGKAFGHHVTVISTSPSKEPEAKQRLGADHFILSSNPKQLQAARRSMDFILDTVSAEHSLLPILELLKVNGTLFLVGAPDKPLQLPAFPLIFGKRSVKGGIIGGIKETQEMLEVCAKYNITSDIELITPDKINEAMERLAKNDVRYRFVIDIANAVTSNNN* >Glyma17g37960.2 sequence type=predicted peptide gene model=Glyma17g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAESRANHTVSVSGWAAHDSSGKITPYSFKRRQNGVNDVTIKILYCGICHTDLHCAKNEWGITMYPVVPGHEIIGEVTKVGTNVKGFMEGDRVGVGCLAASCLECHHCKTDQENYCQDLQFVYNGIFWDGTITYGGYSQIFVADYRYVVHIPASLPMDAAAPLLCAGITVFSPLKEHDLVATAGKRIGVVGLGGLGHIAVKFGKAFGHHVTVISTSPSKEPEAKQRLGADHFILSSNPKQLQAARRSMDFILDTVSAEHSLLPILELLKVNGTLFLVGAPDKPLQLPAFPLIFGKRSVKGGIIGGIKETQEMLEVCAKYNITSDIELITPDKINEAMERLAKNDVRYRFVIDIANAVTSNNN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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