SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75850 | AT | Annotation by Michelle Graham. TAIR10: VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790 | SoyBase | E_val: 0 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0042147 | GO-bp | Annotation by Michelle Graham. GO Biological Process: retrograde transport, endosome to Golgi | SoyBase | N/A | ISS |
| KOG1107 | KOG | Membrane coat complex Retromer, subunit VPS35 | JGI | ISS | |
| PTHR11099 | Panther | VACUOLAR SORTING PROTEIN 35 | JGI | ISS | |
| PF03635 | PFAM | Vacuolar protein sorting-associated protein 35 | JGI | ISS | |
| UniRef100_G7I7R8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting n=2 Tax=Medicago truncatula RepID=G7I7R8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EAD4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EAD4 related cluster n=1 Tax=unknown RepID=UPI000233EAD4 | SoyBase | E_val: 0 | ISS |
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Glyma17g37870 not represented in the dataset |
Glyma17g37870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g40270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g259200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37870.2 sequence type=transcript gene model=Glyma17g37870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATCTAAAAGAACTAACTAAAAATTAATTCAAACAAAAAAATCAAGAGAAAATTGAAATCTAAATTAAATTTGGTAACAAAAAATTACAGTTTATTTTTCAATTTGTCAATTCATCTTCAGGCGCGATTCAATTCAACTACTGTAGCCGAGGTGCGATCTGAGGCAATTGGAAGAGCAATGATAGCACAGGGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGGACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCCGAGCTTCGAACTTCCAGGCTCTCACCTCACAAATACTACCAACTCTATATGAGAGCCTTTGATGAGCTTCGGAGGCTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGCGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTGTATCTCCTTTGCACGGTAGGATCCGTTTACCTCAGATGCAAGGATGCTCCGGTAAAGGATGTTCTTAAAGATCTAGTGGAGATGTGTCGCTCTGTTCAACATCCAATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCTTGATATTGGCTATGAATATGAAGAGGGGGAATCTAATAGTGTGATGGATGCAGTAGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGTTGCAGCATCAGGGACCTGCTCGGATAAGGGAGAAGAGGGAAAAAGAAAGGAACGAGCTTCGTGATCTTGTAGGGAAAAATCTACATGTTCTGAGTCAGATAGAGGGCGTGGACCTTGAGATGTACAAAGACACCGTCCTTCCTAGTGTCTTAGAGCAGGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGTTAGGTGCTTGCCCTCAATTGCAGCCAACAGTAGACATCAAGACAGTGTTATCACAGTTAATGGACAGGTTGTCAAATTATGCTGCTTCTAGTACTGAAGTATTGCCCGAATTTCTGCAAGTGGAAGCATTTACCAAATTAAGCACAGCAATTGGCAGGGTGATAGAAGCACAAGTTGACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTGGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTTGATAAATACAATGATATTGTGACTGCCCTGACACTTTCCAATTATCCTCGTGTAATGTATCATCTTGATCATGAAACAAATAAAGTTATGGCCATGGTTATTATCCAAAGCATTATGAAGAATAACACTTGCATCTCTACTGCCGATAAGGTTGAAGTTTTATTTGAACTAATCAAAGGGCTTATAATGGACTTGGATGGAACAACTGTGGATGAGGTTGATGAAGAAGATTTCAATGAGGAGCAAAATTCTGTCGCTCGCCTCATACACATGCTTCATAATGATGAACCAGAGGAAATGTTTAAGATAATATGTACCGTAAAGAAGCATATTATGAGTGGAGGACCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGAGATAATTGAAGCTCTTTCTTCTGTATCATCTCCTGAACTGGCCCTGAGACTGTATCTGCAATGTGCTGAGTATTCAGCAAAGCTTTTGAAGAAACCTGATCAGTGCCGAGCAGTTTATGCATGCTCTCATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTAAGGATTGCAAATGCTGCTCAACAAATGGCCAATGCAGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTATCCAAGGGCTTATAGAATTGATCACGACCGAGATGCAGAGTGACTCTGCTTCAGCTCTTCCAGCTTCGGATGCCTTTTTTACCAGCACATTGAGGTACATCCAATTCCAAAAACAGAAGGGTGGTATACTGGGTGAAAAATATGATCCCATCAATGTCTCAATCCCTGCCTAACATATCCAGGACGCCCAAATGGGAAGTTGTATGAAAAGCCAAACATGTTGTTGTGAGTGTTCATCTTCATCTTGAAAAACAAAATAAAAAAAGGTTTATCAGTGTTCACTACTTGTGCATTATAAAGTGTTTGCAGTGGCATCAAGTTCATTTAGAAGTGAATAATCTTCCTACAAATTCTTCTACTTGCTAAATGAAGAAATAATTGAATGTATTTTATACTGCAAGATATTAAATGTACTTACATTTTCATTTAGTTCTTTTATTGGGAAGATTAGTAGGAGGATAAAGTATATAGCATCACTCTTAATGCACAATTAGCATGTGCAGTTTAATTAAAACTGCATGAATTGAATGTCCATTACTCTTGCATTTACATGTTTGCAGTGGCGTCAAGATCATTATAAAGCACGATTGGTATTTGCA
>Glyma17g37870.1 sequence type=CDS gene model=Glyma17g37870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAGCACAGGGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGGACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCCGAGCTTCGAACTTCCAGGCTCTCACCTCACAAATACTACCAACTCTATATGAGAGCCTTTGATGAGCTTCGGAGGCTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGCGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTGTATCTCCTTTGCACGGTAGGATCCGTTTACCTCAGATGCAAGGATGCTCCGGTAAAGGATGTTCTTAAAGATCTAGTGGAGATGTGTCGCTCTGTTCAACATCCAATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCTTGATATTGGCTATGAATATGAAGAGGGGGAATCTAATAGTGTGATGGATGCAGTAGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGTTGCAGCATCAGGGACCTGCTCGGATAAGGGAGAAGAGGGAAAAAGAAAGGAACGAGCTTCGTGATCTTGTAGGGAAAAATCTACATGTTCTGAGTCAGATAGAGGGCGTGGACCTTGAGATGTACAAAGACACCGTCCTTCCTAGTGTCTTAGAGCAGGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGTTAGGTGCTTGCCCTCAATTGCAGCCAACAGTAGACATCAAGACAGTGTTATCACAGTTAATGGACAGGTTGTCAAATTATGCTGCTTCTAGTACTGAAGTATTGCCCGAATTTCTGCAAGTGGAAGCATTTACCAAATTAAGCACAGCAATTGGCAGGGTGATAGAAGCACAAGTTGACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTGGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTTGATAAATACAATGATATTGTGACTGCCCTGACACTTTCCAATTATCCTCGTGTAATGTATCATCTTGATCATGAAACAAATAAAGTTATGGCCATGGTTATTATCCAAAGCATTATGAAGAATAACACTTGCATCTCTACTGCCGATAAGGTTGAAGTTTTATTTGAACTAATCAAAGGGCTTATAATGGACTTGGATGGAACAACTGTGGATGAGGTTGATGAAGAAGATTTCAATGAGGAGCAAAATTCTGTCGCTCGCCTCATACACATGCTTCATAATGATGAACCAGAGGAAATGTTTAAGATAATATGTACCGTAAAGAAGCATATTATGAGTGGAGGACCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGAGATAATTGAAGCTCTTTCTTCTGTATCATCTCCTGAACTGGCCCTGAGACTGTATCTGCAATGTGCTGAGGCTGCTAATGACTGTGACCTTGAGCCTGTTGCTTATGAATTTTTCACTCAGGCATTTGTATTATATGAAGAAGAAATTGCGGACTCCAAAGCCCAAGTAACCGCAATACATTTAATTATTGGGTCTCTTCAGAGAATGAATGTCTTTGGCATTGAGAACAGGGATACATTAACACACAAGGCCACAGGGTATTCAGCAAAGCTTTTGAAGAAACCTGATCAGTGCCGAGCAGTTTATGCATGCTCTCATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTAAGGATTGCAAATGCTGCTCAACAAATGGCCAATGCAGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTATCCAAGGGCTTATAGAATTGATCACGACCGAGATGCAGAGTGACTCTGCTTCAGCTCTTCCAGCTTCGGATGCCTTTTTTACCAGCACATTGAGGTACATCCAATTCCAAAAACAGAAGGGTGGTATACTGGGTGAAAAATATGATCCCATCAATGTCTCAATCCCTGCCTAA >Glyma17g37870.2 sequence type=CDS gene model=Glyma17g37870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAGCACAGGGATTCGAGGACGAAGAGAAATGGCTCGCCGAGGGGATCGCCGGCATTCAGCACAACGCATTCTTCATGCATCGCGCACTGGACGATAACAATCTCAGAGACGCTCTCAAATACTCCGCGCAGATGCTATCCGAGCTTCGAACTTCCAGGCTCTCACCTCACAAATACTACCAACTCTATATGAGAGCCTTTGATGAGCTTCGGAGGCTGGAGATTTTCTTCAAAGACGAAAGCAGACACGGCGTTTCCATAGTTGATCTCTACGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTGTATCTCCTTTGCACGGTAGGATCCGTTTACCTCAGATGCAAGGATGCTCCGGTAAAGGATGTTCTTAAAGATCTAGTGGAGATGTGTCGCTCTGTTCAACATCCAATTCGTGGTCTATTTTTGAGGAGTTACCTTTCTCAAGTCAGTAAAGATAAGTTGCTTGATATTGGCTATGAATATGAAGAGGGGGAATCTAATAGTGTGATGGATGCAGTAGAATTTGTTCTACAGAATTTCACAGAAATGAATAAGCTTTGGGTTCGGTTGCAGTTGCAGCATCAGGGACCTGCTCGGATAAGGGAGAAGAGGGAAAAAGAAAGGAACGAGCTTCGTGATCTTGTAGGGAAAAATCTACATGTTCTGAGTCAGATAGAGGGCGTGGACCTTGAGATGTACAAAGACACCGTCCTTCCTAGTGTCTTAGAGCAGGTTGTCAATTGTAAAGATGAGCTTGCCCAATTTTATCTTATGGAGTGCATAATCCAGGTTTTTCCCGATGAGTACCATTTGCAGACACTTGAGACTTTGTTAGGTGCTTGCCCTCAATTGCAGCCAACAGTAGACATCAAGACAGTGTTATCACAGTTAATGGACAGGTTGTCAAATTATGCTGCTTCTAGTACTGAAGTATTGCCCGAATTTCTGCAAGTGGAAGCATTTACCAAATTAAGCACAGCAATTGGCAGGGTGATAGAAGCACAAGTTGACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTGGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTTGATAAATACAATGATATTGTGACTGCCCTGACACTTTCCAATTATCCTCGTGTAATGTATCATCTTGATCATGAAACAAATAAAGTTATGGCCATGGTTATTATCCAAAGCATTATGAAGAATAACACTTGCATCTCTACTGCCGATAAGGTTGAAGTTTTATTTGAACTAATCAAAGGGCTTATAATGGACTTGGATGGAACAACTGTGGATGAGGTTGATGAAGAAGATTTCAATGAGGAGCAAAATTCTGTCGCTCGCCTCATACACATGCTTCATAATGATGAACCAGAGGAAATGTTTAAGATAATATGTACCGTAAAGAAGCATATTATGAGTGGAGGACCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTAAGGTTGATCAGGCGGTTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAGCTTTTAAATGAGATAATTGAAGCTCTTTCTTCTGTATCATCTCCTGAACTGGCCCTGAGACTGTATCTGCAATGTGCTGAGTATTCAGCAAAGCTTTTGAAGAAACCTGATCAGTGCCGAGCAGTTTATGCATGCTCTCATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTAAGGATTGCAAATGCTGCTCAACAAATGGCCAATGCAGCAAGGGGTAGCAGTGGTCCAGTGACGCTCTTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCTCAGATCACTAGTTCTACTATCCAAGGGCTTATAGAATTGATCACGACCGAGATGCAGAGTGACTCTGCTTCAGCTCTTCCAGCTTCGGATGCCTTTTTTACCAGCACATTGAGGTACATCCAATTCCAAAAACAGAAGGGTGGTATACTGGGTGAAAAATATGATCCCATCAATGTCTCAATCCCTGCCTAA
>Glyma17g37870.1 sequence type=predicted peptide gene model=Glyma17g37870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIAQGFEDEEKWLAEGIAGIQHNAFFMHRALDDNNLRDALKYSAQMLSELRTSRLSPHKYYQLYMRAFDELRRLEIFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYLRCKDAPVKDVLKDLVEMCRSVQHPIRGLFLRSYLSQVSKDKLLDIGYEYEEGESNSVMDAVEFVLQNFTEMNKLWVRLQLQHQGPARIREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLMDRLSNYAASSTEVLPEFLQVEAFTKLSTAIGRVIEAQVDDMPIVGAIALHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDIVTALTLSNYPRVMYHLDHETNKVMAMVIIQSIMKNNTCISTADKVEVLFELIKGLIMDLDGTTVDEVDEEDFNEEQNSVARLIHMLHNDEPEEMFKIICTVKKHIMSGGPRRLPFTVPSLIFSALRLIRRLQGQDGDIVGEEVPTTPKKIFQLLNEIIEALSSVSSPELALRLYLQCAEAANDCDLEPVAYEFFTQAFVLYEEEIADSKAQVTAIHLIIGSLQRMNVFGIENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANAARGSSGPVTLFVEILNKYIYYFEKGNPQITSSTIQGLIELITTEMQSDSASALPASDAFFTSTLRYIQFQKQKGGILGEKYDPINVSIPA* >Glyma17g37870.2 sequence type=predicted peptide gene model=Glyma17g37870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIAQGFEDEEKWLAEGIAGIQHNAFFMHRALDDNNLRDALKYSAQMLSELRTSRLSPHKYYQLYMRAFDELRRLEIFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYLRCKDAPVKDVLKDLVEMCRSVQHPIRGLFLRSYLSQVSKDKLLDIGYEYEEGESNSVMDAVEFVLQNFTEMNKLWVRLQLQHQGPARIREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLMDRLSNYAASSTEVLPEFLQVEAFTKLSTAIGRVIEAQVDDMPIVGAIALHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDIVTALTLSNYPRVMYHLDHETNKVMAMVIIQSIMKNNTCISTADKVEVLFELIKGLIMDLDGTTVDEVDEEDFNEEQNSVARLIHMLHNDEPEEMFKIICTVKKHIMSGGPRRLPFTVPSLIFSALRLIRRLQGQDGDIVGEEVPTTPKKIFQLLNEIIEALSSVSSPELALRLYLQCAEYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANAARGSSGPVTLFVEILNKYIYYFEKGNPQITSSTIQGLIELITTEMQSDSASALPASDAFFTSTLRYIQFQKQKGGILGEKYDPINVSIPA*
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