Report for Sequence Feature Glyma17g37800
Feature Type: gene_model
Chromosome: Gm17
Start: 41527426
stop: 41529814
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g37800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G75800 AT
Annotation by Michelle Graham. TAIR10: Pathogenesis-related thaumatin superfamily protein | chr1:28458889-28460447 FORWARD LENGTH=330
SoyBase E_val: 4.00E-139 ISS
GO:0051707 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to other organism
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00314 PFAM
Thaumatin family
JGI ISS
UniRef100_G7I7Q3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Thaumatin-like protein n=1 Tax=Medicago truncatula RepID=G7I7Q3_MEDTR
SoyBase E_val: 2.00E-176 ISS
UniRef100_I1MY36 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY36_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g37800
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g37800
Paralog Evidence Comments
Glyma14g40351 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g37800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g258500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g37800
Coding sequences of Glyma17g37800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g37800.1 sequence type=CDS gene model=Glyma17g37800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATCGCCCAACACTATCATTATTTTCATTCCTACTAACACTCCATCTATCACTATCAGGGGTAATTTCAACCACTTTCACTCTAGTTAACAAATGTGAGTACACGGTGTGGCCGGGAATTCTTTCCAATGCTGGTGTTCCTCCTCTTTCCACCACAGGCTTCGTTCTCCAAACCGGCGCGTCCACTACAATCGCCGCACCCGCGTCTTGGGGTGGCCGTTTCTGGGGCAGAACATTATGCTCCCAGGACTCAACCAGCGGCAAGTTCTCCTGCGTCACCGGCGACTGCGGCTCCGGCAAGCTCGAGTGCTCCGGAAACGGCGCCGCGCCGCCTGCCACCCTGGCCGAGTTCACCCTGGACGGCGCCGGAGGACTCGATTTCTTCGATGTAAGCCTTGTCGACGGCTACAACGTGCCGATGCTGGTGGTGCCGCAGGGTGGCTCCGGCGGGAAGTGCAGCGCGACGGGGTGCGTCGGGGACCTGAACGGCGCGTGTCCCTCAGAGCTGAAGGTGATGAGTGGCGATGGGAGAGAGGGAGTGGTGGCGTGCAAGAGCGCGTGCGAGGCGTTTAACTCGCCGCAGTATTGCTGCAGTGGCGCGTACGGCACGCCCGACACGTGCAAGTCTTCGTCTTACTCCGAGATATTCAAGAGCGCTTGCCCACGCGCCTATAGCTACGCTTACGACGACAAGACCAGCACCTTCACCTGCGCTTCCGCGGATTATACCATCACCTTTTGTCCTTCCCCCACCACCAGTCAGAAGGCATCACAGGGGCAAGATGGTTCTTCTACTACCTCTCCCTTGCTGAACAACAACGGCACAATGGTGTATGAAGGTGCATTTGGTCAGAATGAAATCTCGTGGGCCACGTGCAGCCACGTGTTCCAATCCCAAGCCCTCGCCGGCATTGTCAGTATGACGATGGCTATGTGGCTCTTCTAA
Predicted protein sequences of Glyma17g37800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g37800.1 sequence type=predicted peptide gene model=Glyma17g37800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDRPTLSLFSFLLTLHLSLSGVISTTFTLVNKCEYTVWPGILSNAGVPPLSTTGFVLQTGASTTIAAPASWGGRFWGRTLCSQDSTSGKFSCVTGDCGSGKLECSGNGAAPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVVPQGGSGGKCSATGCVGDLNGACPSELKVMSGDGREGVVACKSACEAFNSPQYCCSGAYGTPDTCKSSSYSEIFKSACPRAYSYAYDDKTSTFTCASADYTITFCPSPTTSQKASQGQDGSSTTSPLLNNNGTMVYEGAFGQNEISWATCSHVFQSQALAGIVSMTMAMWLF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
