Glyma17g37710 - SoyBase

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Report for Sequence Feature Glyma17g37710

Feature Type:	gene_model
Chromosome:	Gm17
Start:	41446518
stop:	41450637
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g37710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75710	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr1:28428806-28431128 FORWARD LENGTH=462	SoyBase	E_val: 6.00E-176	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_B9R880	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R880_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EACD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EACD related cluster n=1 Tax=unknown RepID=UPI000233EACD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g37710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g37710

Paralog	Evidence	Comments
Glyma14g40450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g37710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g257700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g37710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g37710

Limit To All Plant Sequences

>Glyma17g37710.1   sequence type=CDS   gene model=Glyma17g37710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCCTAACTTCCTTACCTGAACAGTCCTCCAGTACCCCCAAACGCCACCACAAGCGCAAACCCCAACAACAACAACAACAACAGAAACAGAAACCAGCTTCCTCATGGGACCAAATCAAGAACCTCTTAACCTGCAAACAGATCGAAGGGTCGAGAGTGCATGACCCTTCAAAAGTGGTAAGTGGGTACTCGAAGCTAGGGTCATCTTGCAGCTCCATATGCAGCTTCAGAGATGTGGTTCATGGGAACACACGTGTTGTGCACAGGTCTGATAACTCCTCACCAGAGAGTAGTTCTCTGGGTCAGGAAACTAATGGGTTACTCACTAGGAAACCTGTTACTACTACTACTACTACTACTACTCGCTCTTCTGCAAAATCACACGGTGGAGCAACCTACACGTCATCATCATCTTCCAGAGGCATGCAATTCAGGAAGCTTTCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCAGGTTGCCAATTGCGAGGAGCACTGTGTGTGCTTGTTCTCACTGTGGTGAGGTCTTCCCTAAAATGGAAAGTTTGGAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTAGGTCCGGAGGATTCGGGTCGGAACATAGTGGAAATAATCTTCAAGTCGAGTTGGTTGAAGAAGGACAACCCGATATGCAAGATCGAACGGATACTAAAAGTGCACAACACCCAACGCACCATCCAACGGTTCGAGGAGTGCAGGGACACCGTAAAGAACCGTGCGCTGGGCAGCACCAAGAAAAACCCCAGGTGCGCAGCAGACGGCAACGAACTCTTGCGGTTCCACTGCACCACCTTAACGTGCGCACTGGGCGCACGTGGCTCCTCCTCCCTCTGCGCCTCCGTACATGGCAGTTGCGGTGTCTGCACCATCATCAGGCACGGTTTCCAAGGTGGTAGTTGCGGCGGCGGCAGTGGAGACCACGGGAAGGCGAAGGGCGTGAGGACCACCGCCAGCAGCGGTAGGGCCCACGACTCTGTTGTGTGCGGTGACGCCACGCGCAGGGCTATGCTTGTGTGTCGCGTGATCGCTGGAAGAGTGAAGCGCGTGGTCGAAGACGCGCCGTCCGAGGAGGAACACGTGTCGGTTGCGTCGTATGATTCCGTTGCTGGGTACGCTGGAATCTACTCGAATCTCGAGGAACTTGTTGTTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTAGTCATTTACAAAGTCCCTTCGTGTTAG

Predicted protein sequences of Glyma17g37710

Limit To All Plant Sequences

>Glyma17g37710.1   sequence type=predicted peptide   gene model=Glyma17g37710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLTSLPEQSSSTPKRHHKRKPQQQQQQQKQKPASSWDQIKNLLTCKQIEGSRVHDPSKVVSGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETNGLLTRKPVTTTTTTTTRSSAKSHGGATYTSSSSSRGMQFRKLSGCYECHMIIDPSRLPIARSTVCACSHCGEVFPKMESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDTVKNRALGSTKKNPRCAADGNELLRFHCTTLTCALGARGSSSLCASVHGSCGVCTIIRHGFQGGSCGGGSGDHGKAKGVRTTASSGRAHDSVVCGDATRRAMLVCRVIAGRVKRVVEDAPSEEEHVSVASYDSVAGYAGIYSNLEELVVFNPKAILPCFVVIYKVPSC*

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