SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45730 | AT | Annotation by Michelle Graham. TAIR10: eukaryotic initiation factor 3 gamma subunit family protein | chr2:18836519-18839123 REVERSE LENGTH=446 | SoyBase | E_val: 9.00E-180 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0006446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| KOG1416 | KOG | tRNA(1-methyladenosine) methyltransferase, subunit GCD10 | JGI | ISS | |
| PTHR12945 | Panther | TRANSLATION INITIATION FACTOR EIF3-RELATED | JGI | ISS | |
| PF04189 | PFAM | Gcd10p family | JGI | ISS | |
| UniRef100_G7I755 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA (Adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 n=1 Tax=Medicago truncatula RepID=G7I755_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MY27 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY27_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g37700 not represented in the dataset |
Glyma17g37700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g40460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g257600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37700.1 sequence type=CDS gene model=Glyma17g37700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTGAAAGTAGTAGTAGCAGAGTCACATGGGAAGGTTGCAGCGTCTTGCTCGACATCAACGACGGTGACCGTCTCGTTTTCGCTCGTCTCTCCCCCGCTGCAAAATTGAAGATTGGGAATAAGAACTGCTCTCTGCAACCGTTAATTGGCTGTCCCTTCGGTACTGTTTTTCAAGTCGATGGACCTTTCCTCTCTCCCGCACAAGTTAATGGTAATAATGCTGAAGAAGTAAGAGATGGTCAAGTAAGTGTCGAGTCCAGGGACAAAGTTAATAATGATAATAATCCTGAAGAAGTGAGAGATGGTCGAGCAAATGTTGATTCGAGGGACAATCGTGCCTTGGTTGACAATAACACGGCACAGAGCCTGACTGGTGAGGATATAGAAGCCATGCGAAGACAGGGTGCGGGAGGTAATGAAATAATTGAAGCTCTCATTGCCAATAGTGCAACATTCGAGAAGAAAACATCATTCTCACAGGAGAAATATAGACTTAAGAAGCAGAAGAAATATGCACCAAAAGTACTTATGAGGCGTCCTGTTGCTCGAAGTATATGTGAGGCCTATTTTAAGAAGTATCCATCTAAAATTGGATTCTTGCGGGTGGACACATTGTCCCTTCTACTTTCCATGGGTAATGTTTCTTCAAATTCTGACATTCTTGTAGTTGATATGGTTGGTGGCCTTCTTACTGGTGCTGTGGCAGAACGTTTAGGAGGTACTGGTTTTGTATGCAACTCATATATTGGGCAGGCACCATATTCCATGGATATTGTGAGGATATTTAACTTAAGTGATGAAATCTGCAAGAGAATTGTACGGTCTCCCATTTCTGACTTGTTATCACAAAAAGAATCACCTGAACAAACTCTGCAACCTGATGATGCGTGCAATGTGGAAAGCCAGTCAAATGATCAAATATCTGCATCGACCAGCATGGAGGATATCTCTCATTCATCGGAAAATGGAATTTCTGATCTTGGGGCTGAGAATACTGAACCTGCTAAAGAAGTTTGGAAAGCTCCAAAGGCCGGAGAAAGGGCGCAAAAAGAAATCATTGACTTGTGGAAGGAAAATGGTTTTTCTAGTCTAATTATTGCTGCACCAGAGTTGGATACTTGGACATTGGTTAGAGATATCTTGCCCCTTTTAGCAGACTCTGCTCCATTTGCTATTTATCACCAATATCTTCAGCCTCTTGCAACTTGCATGCACAATTTACAGCTTGAGAAAATGGCTATTGGATTGCAAATAACAGAGCCTTGGCTGCGTGAATACCAGGTACTTCCATCTAGAACTCACCCATGCATGCAAATGAGCTCATTTGGGGGCTACATTCTCAGTGGGACTAAGATATGCAGCACAGAATGA
>Glyma17g37700.1 sequence type=predicted peptide gene model=Glyma17g37700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCESSSSRVTWEGCSVLLDINDGDRLVFARLSPAAKLKIGNKNCSLQPLIGCPFGTVFQVDGPFLSPAQVNGNNAEEVRDGQVSVESRDKVNNDNNPEEVRDGRANVDSRDNRALVDNNTAQSLTGEDIEAMRRQGAGGNEIIEALIANSATFEKKTSFSQEKYRLKKQKKYAPKVLMRRPVARSICEAYFKKYPSKIGFLRVDTLSLLLSMGNVSSNSDILVVDMVGGLLTGAVAERLGGTGFVCNSYIGQAPYSMDIVRIFNLSDEICKRIVRSPISDLLSQKESPEQTLQPDDACNVESQSNDQISASTSMEDISHSSENGISDLGAENTEPAKEVWKAPKAGERAQKEIIDLWKENGFSSLIIAAPELDTWTLVRDILPLLADSAPFAIYHQYLQPLATCMHNLQLEKMAIGLQITEPWLREYQVLPSRTHPCMQMSSFGGYILSGTKICSTE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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