SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75660 | AT | Annotation by Michelle Graham. TAIR10: 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020 | SoyBase | E_val: 0 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA recombination | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0010587 | GO-bp | Annotation by Michelle Graham. GO Biological Process: miRNA catabolic process | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004527 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: exonuclease activity | SoyBase | N/A | ISS |
| GO:0004534 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5'-3' exoribonuclease activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2044 | KOG | 5'-3' exonuclease HKE1/RAT1 | JGI | ISS | |
| PTHR12341 | Panther | 5'->3' EXORIBONUCLEASE | JGI | ISS | |
| PF00098 | PFAM | Zinc knuckle | JGI | ISS | |
| PF03159 | PFAM | XRN 5'-3' exonuclease N-terminus | JGI | ISS | |
| UniRef100_B9R871 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EA91 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA91 related cluster n=1 Tax=unknown RepID=UPI000233EA91 | SoyBase | E_val: 0 | ISS |
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Glyma17g37650 not represented in the dataset |
Glyma17g37650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g40510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g257100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37650.1 sequence type=CDS gene model=Glyma17g37650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGTCCCAGCGTTCTACCGATGGCTGGCGGAGAAGTATCCGATGGTGATTGTGGACGCGATCGAAGAGGAAGCGGTCGTAATCGACGGCGTTCAAATCCCCGTCGATACGAGCAACAAGAACCCTAACAACATCGAATACGATAACCTCTATCTCGACATGAATGGCATCATTCATCCTTGCTTTCACCCCGAGGATAGGCCGTCTCCGACGTCGTTTGATGAGGTGTTTGAGTGCATGTTCGACTACATTGACAGACTATTCGTCATGGTGCGGCCGCGGAAGCTGCTCTATATGGCTATTGACGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAGCGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCAGCTGATGCGGCTGCTGAAGAAACAAGGTTAAGGGAGGAATTTGAGAAGGAGGGAAGAAAGCTTCCTCCTAAAGGAGAGTCACAGACTTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAATGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACACGACATTGCCTCTATGGTTTGGATGCTGATTTGATTATGTTGGCATTGGCTACCCATGAAATTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGTCATATGGCTGCAAACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGGCGAAAAAGCCCTTCCAGTTCCTAAATATATGGACTCTGAGAGAATATCTGGAGTATGAGATGAGAATACCTAATCCTCCTTTCGAGATTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGTTTTTTTGTCGGCAATGATTTTCTACCACACATGCCTACACTAGAGATTCGTGAGGGTGCAATTAACTTGCTGATAGCAGTATACAAGAAGGAATTTAGGGAATTCGGTGGTTATTTAACCAATGGAAGCACGATAAATTTGAGCAAGGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAACAGAAAGAATAAAGCGTGAAAAGGCACAGGCAAGGAGGGGAGATGATGCTGAGCCTCAATTTAAACCAGAGTCTTTAGTTGCAGTTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAAATCCTTCACCATTTCAACCATCTGGGCATTATAATTCTCAAGTGTCTGCATCAGTTAGAAAAGACAATAAAGAAGCCTTTGAGAGGCCTTATAAAGTTGCTAGGGTTTCTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAATAATCTTGAAATAGATGCTCAAGATAATAAAGATGAATTGAAAACAAAATTAAAGGAGATACTTCGTGAGAAATCTGATGTATTCAACTCAAAGAATGCTGAAGAGGATAAGATTAAATTGGGAGAACCTGGCTGGAAAGAGAGGTATTATGATGAAAAATTTTCTGCCAAAACTCCTGAGGAACTTGAAGCGATACGTAAAGATGTTGTCTTGAAATACACTGAAGGGCTATGTTGGGTGATGCACTATTATTATGAAGGTGTTTGTTCTTGGAATTGGTTTTATCCTTATCACTATGCTCCCTTTGCGTCTGATCTCAAGGGCCTTGGTGAACTTGATATTAGCTTTAAGCTGGGTACCCCATTCAAACCATATGACCAGCTTCTAGGGGTTTTTCCTGCTGCAAGCTCTCATGCACTTCCTGAGCCATATAGGAGACTTATGACTGATCCAAGCTCACCAATCATTGATTTTTATCCAGTTGACTTTGAAGTGGACATGAATGGCAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTGCCATTTATTGATGAAGTGCGTCTTCTTGCAGAAGTTCAAAAGATTGAAAACTTGTTAACACCAGAGGAAAAGCGACGGAATGCTATAATGTTCGACTTGCTCTTTGTGAATTCTTGTCATCCTCTCTCTGCGTGCATAAGTACACTTGACAACAAGTGTAAAAACATGCCCAACAGTGAACGGGCTGTGGTCAAGGAAAAAATCAATCCCAAAGAAAGTGGTGGAATGAATGGTTACATATCCTTATGTGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTCGCAAGCATGGAAGATATCATGGACAATCATGTTATATGTGCAATATACAGACTCCCAGATGCACATACACACATTACCCGACCACCTCAAGGAGTTAAATTTCCAAAAAAGATTGTTGGAATTGAGGATTTAAAACCTGAACCTGTTTTGTGGCATGAAGATTCAGGCAGGAGACACCATGCTGAAAATGGGAGGAAAAACCCTCCAGGATCTATTTCTGGTCGGGAGCTTGGGGATGCAGCACACAGACTCATCGTCAATTCCTTACAGGCAAAGGTTGATACTAATGGATACCGCCATCCGCATAATGGTCCTCCTATATCTTATCCTGCACCCATGGGTCATCATCGACAACCATTGCCTTCACATGGTTATGAATCATGCCCGGGATACGTTGCAATGCCGCCACCTATTTCAGCTCCCTCACTCCAAGGCAGACCACAGTTTGCACCTTACAATGCTGTCCCTACTGCTCCGCAGTATGGTTATAATCAACCATACCCTGCGCCACCGGTGGGGTACAATCATCCTCGCCAGCAATCAAATCCTGTCGAAAGAAATGACTATCAACACCCTAGATCACATAATTATGAAAGAAATCACCATCAAGGTAGTGGGGGTAGTTCAAGGCATGGATATCAATCATCAGGAAATAATCACAATGCTAGGTTTAATAATTCACATGGTAGTCACCACAGCCAAAGCTTCCAACCTAGAGCTCATCAGAATTGGACTCCACGAAACAACCCGAGTGGGCACAGGGATCATGGTCAGTATTCGTCCAATCAATATTCTTTGTTAGATAGAAGAGGAAACAGGAATCAAATGCCACCACCTGGTTACAGTCGCAAATAA
>Glyma17g37650.1 sequence type=predicted peptide gene model=Glyma17g37650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVPAFYRWLAEKYPMVIVDAIEEEAVVIDGVQIPVDTSNKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEETRLREEFEKEGRKLPPKGESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKAGEFDEKGEAIVAKKPFQFLNIWTLREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFREFGGYLTNGSTINLSKVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQARRGDDAEPQFKPESLVAVSRFHGSRLASAPNPSPFQPSGHYNSQVSASVRKDNKEAFERPYKVARVSSGATVAAAIVEAENNLEIDAQDNKDELKTKLKEILREKSDVFNSKNAEEDKIKLGEPGWKERYYDEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKGLGELDISFKLGTPFKPYDQLLGVFPAASSHALPEPYRRLMTDPSSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEVRLLAEVQKIENLLTPEEKRRNAIMFDLLFVNSCHPLSACISTLDNKCKNMPNSERAVVKEKINPKESGGMNGYISLCGGEPCPPIFRSPVASMEDIMDNHVICAIYRLPDAHTHITRPPQGVKFPKKIVGIEDLKPEPVLWHEDSGRRHHAENGRKNPPGSISGRELGDAAHRLIVNSLQAKVDTNGYRHPHNGPPISYPAPMGHHRQPLPSHGYESCPGYVAMPPPISAPSLQGRPQFAPYNAVPTAPQYGYNQPYPAPPVGYNHPRQQSNPVERNDYQHPRSHNYERNHHQGSGGSSRHGYQSSGNNHNARFNNSHGSHHSQSFQPRAHQNWTPRNNPSGHRDHGQYSSNQYSLLDRRGNRNQMPPPGYSRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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