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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13430 | AT | Annotation by Michelle Graham. TAIR10: isopropyl malate isomerase large subunit 1 | chr4:7804194-7807789 REVERSE LENGTH=509 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008652 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| GO:0016836 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydro-lyase activity | SoyBase | N/A | ISS |
| GO:0050486 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity, transferring hydroxy groups | SoyBase | N/A | ISS |
| GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG0454 | KOG | 3-isopropylmalate dehydratase (aconitase superfamily) | JGI | ISS | |
| PTHR11670 | Panther | ACONITASE | JGI | ISS | |
| PTHR11670:SF16 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00330 | PFAM | Aconitase family (aconitate hydratase) | JGI | ISS | |
| PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | ISS | |
| UniRef100_G7I6Q7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-isopropylmalate dehydratase n=1 Tax=Medicago truncatula RepID=G7I6Q7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MY16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY16_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g37541 not represented in the dataset |
Glyma17g37541 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g40570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g256100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37541.1 sequence type=CDS gene model=Glyma17g37541 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCTCTCTTCTCTCTCCATCATTCACTTCCTTCCCCCGCATAAAGAAGGATGTCTCTCTCTCTGCTTTCACTTCTCAGCGATGCTTCAAAGCGCTTCCAAGGAGAATAATCCGTTGTGCTGTGGCGGCGCCTCAGCGCCAACCTTCCACCACTGGATCAGTGAGGACTGCAATGACCATGACTGAGAAGATACTGGCCAGAGCTTCTGAGAAGGTACAGCTGACCCCTGGCGATAATGTTTGGGTCAATGTTGATATTTTGATGACACATGATGTGTGTGGCCCTGGTTCTATTGGGATTTTCAAGAGGGAGTTTGGTGACGATGCCAAGGTTTGGGACCGTGAAAAGCTTGTAATAATACCCGACCATTATATATTCACAAGTGATGAACGTGCCAATCGCAATGTAGACATATTAAGAGATTTCTGCCATGAGCAGAATATCAAGTACTTTTATGATATTAAGGATCTCAGTAATTTTAAGGTAAATCCAGACTATAAGGGTGTTTGCCATGTTGCCCTTGCTCAGGAAGGTCATTGTAGGCCTGGAGAGGTTCTCTTAGGTACTGATTCTCACACTTGTACTGCTGGAGCATTTGGCCAATTTGCTACAGGGATTGGTAATACTGATGCTGGCTTTGTGCTGGGAACTGGGAAACTTCTGCTTAAGGTGCCCCCAACTTTGAGATTTGTAATGGATGGAGAAATGCCTGATTATTTGCTTTCTAAGGATTTGATTCTGCAAATTATTGGTGAAATAACTGTGGCTGGTGCAACATATAAATCGATGGAGTTTGTCGGTACAACTGTTGAAAGTTTAACTATGGAAGAACGGATGACATTGTGCAACATGGTTGTTGAAGCTGGTGGAAAGAATGGTGTTGTTCCTGCTGACAGCACTACATTTAAATATCTTGAGGGCAAGACATCTCTGCCATATGAACCTGTTTATAGTGACGATCAAGCAAGATTTCTTGCTGAGTATAGATTTGATGTCTCAAAATTGGAGCCAGTGGTGGCCAAGCCTCATTCTCCAGATAATCGTGCTTTGGCAAGGGAGTGCAAGGATGTAAAAATTGACAGAGTATACATAGGATCTTGTACAGGTGGCAAAACGGAGGATTTCATGGCTGCTGCAAAAGTTTTTCTGGCATCAGGTAAACAGGTCAAAGTTCCTACATTTCTTGTGCCTGCAACACAAAAGGTTTGGATGGACTTATACTCCCTTCCAGTCCCTGGATCTGGTGGTAAGACGTGCTCCCAGATATTTGAAGAAGCTGGGTGTGACACACCAGCTAGTCCTAGTTGCGGTGCTTGTTTGGGTGGCCCGAAAGATACTTACGCACGCATGAATGAACCTAAGGCAAGGATTATTGTGGACAAGGAGTGGAAGAAGGATGTCGTGGATGTAAGAAGAGTAGGAGATCGTATCATAGCCTTAAAATTGGTAGTGGGACAGGACACCTTTAATGTTATTAGTGGGTACGCACCTCAGGTTGGGTTAGCAGAACACTTTAAGGTAAAATTTTGGGAGGATCTAAAAGGGGTACTTCAGGATATACCCCAAGGAGAGAAAGTTTTCCTAGGAGGGGATCTCAATGGACATGTAGGTAGCGTGGCTAGAGGTTTTGAGGGGGTGCATGGGGGTTTTGGCCTAGGGGAGATGAATGGGGAGGGTAAATCCATCTTGGAGTTTTCGGAGGCTTTGGATCTTTCTATAGCCAATACATGGTTTAAGAAAAGAGAGGACCATCTTATCACTTACAAAAGTGGAGGGACATGTTCTCAGATAGATTTCTTCCTTATCAGGAAGTCTGATAGGAAGTATTGCTTGAACTGTAAAGTTATCCCGGAAGAGAGCCTGACTACCCAACATAGAGTTTTGGTTATGGATGTAAGAATTAGAGATAGGGCAAAGAGAAGAAGTCCTATGGTAGCACCAAGGATCAAATGGTGGCACTTGAAGGGTGAGAAACAAGGAATCTTCCAACAAAAGATATGGGAGGGATGGTGTGGACAATCACAAGGAAGTGCAAATGATCTGTGGAACAAGATGTCCCAAGAGATTATTAAAGTGGCTAAAGAGACGTTGGGTGAATCTAGAGGTTTTGGACCTAGGGGTAAAGAATCGTGGTGGTGGAATGAAAGTGTTCAGAGCAAAGTTAGAGTAAAAAAGGAGTGTTTCAAGGAGTGGTCTAGGTGTAGAAATTCTGAAACTTGGGATAAGTATAAGATAGCTAGAAATGAAACCAAAAAGGCGGTGAGTGAGGCAAGAGCCCAAGCTTTTGACGGACTATACCAAGCTCTAGGAACCAGGGACGGAGAAAGATCTATATATAGGCTTGCTAAGGGTAGAGAGAGGAAGACTAGAGACCTGGATCAAGTAAAGTGTGTTAAGGATGAAGAAGGCAAAGTCTTAGTGCATGAAAAAGATATCAAGGAAAGGTGGAAGGCGTATTTCCACAACTTATTTAATGATGGATATGGATATGACTCTAGCAGTCTAGACACAAGAGAAGAGGACCGGAACTATAAGTACTATCGTCGGATTCAGAAACAGGAAGTAAAGGAAGCGTTGAAAAGAATGAGTAACGGTAAGGCGGTGGGGCCAGACAACATACCTATTGAAGTGTGGAAAACTCTTGGAGATAGAGGTCTTGAGTGGCTCACCAAACTCTTTAATGAAATTATGAGGTCAAAACGCATGCCGGAGGAATGGAGGAGAAGCACGTTAGTTTGTGTTTCAACTACGAACAGGAACTTCCCGGGCCGAATGGGACACAAGGAAGGTCAAATCTATTTGGCTTCCCCATATACAGCTGCTGCATCTGCATTGACCGGTTATGTTACTGATCCTAGAGAGTTCTTGCAGTAG
>Glyma17g37541.1 sequence type=predicted peptide gene model=Glyma17g37541 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSLLSPSFTSFPRIKKDVSLSAFTSQRCFKALPRRIIRCAVAAPQRQPSTTGSVRTAMTMTEKILARASEKVQLTPGDNVWVNVDILMTHDVCGPGSIGIFKREFGDDAKVWDREKLVIIPDHYIFTSDERANRNVDILRDFCHEQNIKYFYDIKDLSNFKVNPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYLLSKDLILQIIGEITVAGATYKSMEFVGTTVESLTMEERMTLCNMVVEAGGKNGVVPADSTTFKYLEGKTSLPYEPVYSDDQARFLAEYRFDVSKLEPVVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKQVKVPTFLVPATQKVWMDLYSLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPKARIIVDKEWKKDVVDVRRVGDRIIALKLVVGQDTFNVISGYAPQVGLAEHFKVKFWEDLKGVLQDIPQGEKVFLGGDLNGHVGSVARGFEGVHGGFGLGEMNGEGKSILEFSEALDLSIANTWFKKREDHLITYKSGGTCSQIDFFLIRKSDRKYCLNCKVIPEESLTTQHRVLVMDVRIRDRAKRRSPMVAPRIKWWHLKGEKQGIFQQKIWEGWCGQSQGSANDLWNKMSQEIIKVAKETLGESRGFGPRGKESWWWNESVQSKVRVKKECFKEWSRCRNSETWDKYKIARNETKKAVSEARAQAFDGLYQALGTRDGERSIYRLAKGRERKTRDLDQVKCVKDEEGKVLVHEKDIKERWKAYFHNLFNDGYGYDSSSLDTREEDRNYKYYRRIQKQEVKEALKRMSNGKAVGPDNIPIEVWKTLGDRGLEWLTKLFNEIMRSKRMPEEWRRSTLVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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