SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33140 | AT | Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:15981648-15984135 FORWARD LENGTH=353 | SoyBase | E_val: 6.00E-99 | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| PF03031 | PFAM | NLI interacting factor-like phosphatase | JGI | ISS | |
| UniRef100_A2Q3Z1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tac7077, putative n=1 Tax=Medicago truncatula RepID=A2Q3Z1_MEDTR | SoyBase | E_val: 8.00E-106 | ISS |
| UniRef100_UPI000233E93F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E93F related cluster n=1 Tax=unknown RepID=UPI000233E93F | SoyBase | E_val: 8.00E-130 | ISS |
|
Glyma17g37491 not represented in the dataset |
Glyma17g37491 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g255700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37491.1 sequence type=CDS gene model=Glyma17g37491 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCATCTTCATCGTTTCTTCTTCTTCTTAGGAAGTGCTTTTTCTTCCTCTTTTCTCTGGTGCTTCTTCTTCCTCTGTTCTCCGGCGACGGTGCTTGTTCATCCTCTTTTGTCCGACAGTGCTTCTTCTTCCTGTTTTCTCCGTGGGTGGTTGGCTGTATTAGGAAACTTTGTGTCAGCTCTCAGCAAGTTCATTGCAGATCGATATTCATCAAATTATTCAGTTTCTGGATATCACGTGTATGAGTTCTGCAAGATATGGAATTGTTCACGTGATGAAGCATATTTCAAGTCAGGGATCCACCCTCTTCCAGGTGCTCAGATGACTCTTCAGAAGTTATCAAGATTTTGTAGCCTATCAGTTGTAACATCACGACAAAATGCAATTAAGGACCACATAATTGAGTGGCTAGAGAAGAATTACCCAGGACTGTTTCATGATATTCACTTTGGTAACCACTTTGCTCTTGATGGTGTGTCAAGACCAAAGTCAGAAATTTGTAGGTCTTTAAATGCCAAGGTTCTTATTGATGATAACCCACGGTATGCCATAGAGTGTGCTGATGTTGGAATTAGAGTCTTACTTTTTGATTATGAAAACTCATATCCTTGGTGCAAGAACGAGTCTGTTGATCAGCATCCACTGGTGACCAGAGTTAAGAACTGGGAAGAAGTGGAACGACAATTAATGTCACTGATAGCTTCTTAG
>Glyma17g37491.1 sequence type=predicted peptide gene model=Glyma17g37491 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLHLHRFFFFLGSAFSSSFLWCFFFLCSPATVLVHPLLSDSASSSCFLRGWLAVLGNFVSALSKFIADRYSSNYSVSGYHVYEFCKIWNCSRDEAYFKSGIHPLPGAQMTLQKLSRFCSLSVVTSRQNAIKDHIIEWLEKNYPGLFHDIHFGNHFALDGVSRPKSEICRSLNAKVLIDDNPRYAIECADVGIRVLLFDYENSYPWCKNESVDQHPLVTRVKNWEEVERQLMSLIAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
