SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24160 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr4:12539871-12542210 FORWARD LENGTH=418 | SoyBase | E_val: 0 | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0055088 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid homeostasis | SoyBase | N/A | ISS |
| GO:0055089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid homeostasis | SoyBase | N/A | ISS |
| GO:0055091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phospholipid homeostasis | SoyBase | N/A | ISS |
| GO:0070328 | GO-bp | Annotation by Michelle Graham. GO Biological Process: triglyceride homeostasis | SoyBase | N/A | ISS |
| GO:0004623 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase A2 activity | SoyBase | N/A | ISS |
| GO:0016298 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0042171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lysophosphatidic acid acyltransferase activity | SoyBase | N/A | ISS |
| KOG4409 | KOG | Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) | JGI | ISS | |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF56 | Panther | gb def: abhydrolase, alpha/beta hydrolase fold [bacillus anthracis a2012] | JGI | ISS | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_G7I5X0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Abhydrolase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7I5X0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MY10 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MY10_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g37460 not represented in the dataset |
Glyma17g37460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g40620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g255400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g37460.1 sequence type=CDS gene model=Glyma17g37460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAAGACATCGGCAAAAGCAACCTCGAATCCTCTGCTGCTGCTTCAACAACCTCCCGAGGTTTCTGGCCTTCCGTCTTACGTTGGATCCCCACTTCCTCCGATCACATCATCAATGCTGAAAAACGCCTTCTTTCTCTTGTCAAGACTCCATATGTTCAAGAACAGGTCAATATAGGTTCCGGTCCACCTGATTCCAAAGTTAGATGGTTCCGTTCATCGAGCAATGAACCACGGTTTATTAACACAGTTACGTTTCACAGTAAGGATGATTCTCCTACGCTGGTGATGGTTCATGGATATGCAGCTTCTCAGGGTTTCTTTTTTCGCAATTTTGATGCCCTTGCCTCCCGTTTCAGAGTGATTGCTATTGATCAACTTGGTTGGGGTGGATCTAGCAGGCCTGACTTTACATGCAGAAGCACTGAAGAAACTGAGGCGTGGTTCGTTGATTCTTTTGAGGAATGGAGAAAGGCCAAAAACCTGAGCAATTTTATACTACTTGGGCATTCTTTTGGTGGTTATGTTGCTTCCAAGTATGCACTTAAGCACCCTGAGCATGTAAAGCACTTGATTCTGGTGGGACCTGCTGGATTTTCATCAGAATCAGAAAGAATTACAAAGTTGTTATCAACATGGAAAGGATCAATCCTGAACCAAATATGGGAATCTAATTTTACACCTCAGAGAATCATCAGAGGTTTAGGTCCTTGGGGTCCTGGTATGGTTCGCAAGTATACAAGTGCCAGGTTTGTTACATATACAACTGGGGAAATGCTGGCAGAATCTGAATCGAGTTTACTGACAGATTATGTTTACCATACTTTAGCAGCCAAAGCCAGTGGCGAGCTGTGCTTAAAATATATATTTTCATTTGGAGCACTCCCGAGGTCACCTCTACTTCACAGTGCATCAGAGTGGAAGGTGCCCACCACCTTCATATATGGTTTTCAGGACTGGATGAATTATGAAGGTGCGCAAGAAGCTCGCAAACAAATGAATGTTCCATGTGAAATCCTTAGGGTTCCCCAGGCCGGGCACTTTGTGTTCATTGACAACCCAAGTGGCTTCCATTCAGCAGTGTTTTATGCCTGTAGAAGGTTTCTTAGGCCTGATCAAGACACTGAATCCCTTCCTGAAGGGCTAACCTCTGCATAG
>Glyma17g37460.1 sequence type=predicted peptide gene model=Glyma17g37460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDIGKSNLESSAAASTTSRGFWPSVLRWIPTSSDHIINAEKRLLSLVKTPYVQEQVNIGSGPPDSKVRWFRSSSNEPRFINTVTFHSKDDSPTLVMVHGYAASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCRSTEETEAWFVDSFEEWRKAKNLSNFILLGHSFGGYVASKYALKHPEHVKHLILVGPAGFSSESERITKLLSTWKGSILNQIWESNFTPQRIIRGLGPWGPGMVRKYTSARFVTYTTGEMLAESESSLLTDYVYHTLAAKASGELCLKYIFSFGALPRSPLLHSASEWKVPTTFIYGFQDWMNYEGAQEARKQMNVPCEILRVPQAGHFVFIDNPSGFHSAVFYACRRFLRPDQDTESLPEGLTSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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