Glyma17g37400 - SoyBase

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Report for Sequence Feature Glyma17g37400

Feature Type:	gene_model
Chromosome:	Gm17
Start:	41144577
stop:	41147939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g37400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39090	AT	Annotation by Michelle Graham. TAIR10: Papain family cysteine protease \| chr4:18215826-18217326 REVERSE LENGTH=368	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0004197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
KOG1542	KOG	Cysteine proteinase Cathepsin F	JGI		ISS
PTHR12411	Panther	CYSTEINE PROTEASE FAMILY C1-RELATED	JGI		ISS
PTHR12411:SF42	Panther	CATHEPSIN-W-RELATED	JGI		ISS
PF00112	PFAM	Papain family cysteine protease	JGI		ISS
PF08246	PFAM	Cathepsin propeptide inhibitor domain (I29)	JGI		ISS
UniRef100_O24322	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase n=1 Tax=Phaseolus vulgaris RepID=O24322_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E96D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E96D related cluster n=1 Tax=unknown RepID=UPI000233E96D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g37400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g37400 not represented in the dataset	Glyma17g37400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g37400

Paralog	Evidence	Comments
Glyma14g40670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g37400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g254900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g37400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g37400

Limit To All Plant Sequences

>Glyma17g37400.2   sequence type=transcript   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGCTCCAATCCATTCCCCCAACCCCAACTCTTCCTCTTTTTACTTCCCCTATGGCTCGTCACTCCTTGCTCTTAGCCCTCCTCCTCTTCGCCGCCGTGGCCACCGCCGCGATGGCGGTGGCCGCGTCCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGATGTTGGCGAAGCCGAAGAGGAGGACAACCTGCTGAACGCCGAGCACCACTTCGCGAGCTTCAAGGCCAAGTTCGCCAAGACCTACGCCACCAAGGAGGAGCACGATCATCGCTTCGGCGTCTTCAAGTCCAACCTCCGCAGAGCCAGGCTGCACGCCAAGCTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTAACTCCGGCCGAGTTCCGCCGCCAGTTCCTCGGCCTCAAGCCGCTCCGCTTCCCGGCGCACGCCCAGAAGGCGCCCATCCTCCCCACCAAGGATCTCCCCAAGGATTTCGATTGGCGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGGGCGTGTGGTTCGTGTTGGTCTTTCAGTACGACGGGAGCGTTGGAAGGAGCTCATTATCTGGCCACTGGTGAGCTCGTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGATCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACTCAGGCTGTAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTCAGTCTGGGGGAGTACAGAAAGAAAAGGACTATCCATACACCGGGAGAGATGGCACCTGCAAATTTGACAAAACCAAAGTTGCGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGAACAAATTGCTGCAAACCTAGTAAAGAATGGCCCTCTTGCAGTTGCTATCAATGCAGTTTTTATGCAGACATATGTTGGTGGCGTCTCATGCCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTCTAGTTGGTTATGGTGAAGGTGCATATGCTCCCATTCGTTTTAAGAACAAACCTTACTGGATCATTAAGAATTCATGGGGCGAGAGCTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGTCGAAATGTGTGTGGAGTAGATTCCATGGTCTCAACTGTAGCTGCTATATATCCATCCAGCCATTAAATACAAAGATATGCCTGATTGTGGTTGTGATGTGATACTGGACTAAGGGGAGTTTGTATAAATATTTATGTTGTGAACTTTATCATTTGGTACTGGTAAAATTATCTCCGTATAGGATCAGGAAACTGCTAAGACCATGTTGTTTATGTAGTATGTAATTTCTGTATGTATGCTTGACATATACAAGTGGGAAATCCAAGGAAATGTGTGGTCCTAAAAATGGTGCAAGATAAGCAACTCTCTATGGAGATTGGCGGGGTGGGGTTGTTTCAAACTGCAACAGGGGAATACTTGCCACTGATTATGTCTCAGTTATTGCATAATTAAACTAATATACGTGCCACTGTCAATGTTGGTTCTTATGGATGTGGTAGTGCCATACCCAAAAGGATACCAAAATGTTTAAGTTGCTTCTGTACCTTTGATTCGTTTACCTTTGAGTTTGTGCATGTATAAAAATTTCTATGGACTTAGGACTTCAAAATGCCAAAATTGCGGGATCCCTAATTTGAGTGCTCCTCTGCTTAGCCTGTCCTGTTCTGATAGTGGAATGGATATATCTGTTTGCAAGAATGTGGACATAAAATGTGTTATAAGAACATGTTAAAATAGTAGTAGGAATAATAAGAGTCAATGCAAATAGGTCTAGCAAGCAAAGGTTATCTGGTATAGGATTTTATCAGGCTTAAGGAACATCTGAAATGCTATAGTAATATAAGTAGTCCACCTAAGCAATGTTCC

>Glyma17g37400.3   sequence type=transcript   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGCTCCAATCCATTCCCCCAACCCCAACTCTTCCTCTTTTTACTTCCCCTATGGCTCGTCACTCCTTGCTCTTAGCCCTCCTCCTCTTCGCCGCCGTGGCCACCGCCGCGATGGCGGTGGCCGCGTCCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGATGTTGGCGAAGCCGAAGAGGAGGACAACCTGCTGAACGCCGAGCACCACTTCGCGAGCTTCAAGGCCAAGTTCGCCAAGACCTACGCCACCAAGGAGGAGCACGATCATCGCTTCGGCGTCTTCAAGTCCAACCTCCGCAGAGCCAGGCTGCACGCCAAGCTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTAACTCCGGCCGAGTTCCGCCGCCAGTTCCTCGGCCTCAAGCCGCTCCGCTTCCCGGCGCACGCCCAGAAGGCGCCCATCCTCCCCACCAAGGATCTCCCCAAGGATTTCGATTGGCGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGGGCGTGTGGTTCGTGTTGGTCTTTCAGTACGACGGGAGCGTTGGAAGGAGCTCATTATCTGGCCACTGGTGAGCTCGTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGATCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACTCAGGCTGTAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTCAGTCTGGGGGAGTACAGAAAGAAAAGGACTATCCATACACCGGGAGAGATGGCACCTGCAAATTTGACAAAACCAAAGTTGCGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGAACAAATTGCTGCAAACCTAGTAAAGAATGGCCCTCTTGCAGGTAACTTAATTGTTCTCTGAACAAAAAGACTTGGTTCCGTAACTTACTTGCCCCCATTCCCCCCTACTAAAAGAAATTATAGACA

Coding sequences of Glyma17g37400

Limit To All Plant Sequences

>Glyma17g37400.1   sequence type=CDS   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGTCACTCCTTGCTCTTAGCCCTCCTCCTCTTCGCCGCCGTGGCCACCGCCGCGATGGCGGTGGCCGCGTCCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGATGTTGGCGAAGCCGAAGAGGAGGACAACCTGCTGAACGCCGAGCACCACTTCGCGAGCTTCAAGGCCAAGTTCGCCAAGACCTACGCCACCAAGGAGGAGCACGATCATCGCTTCGGCGTCTTCAAGTCCAACCTCCGCAGAGCCAGGCTGCACGCCAAGCTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTAACTCCGGCCGAGTTCCGCCGCCAGTTCCTCGGCCTCAAGCCGCTCCGCTTCCCGGCGCACGCCCAGAAGGCGCCCATCCTCCCCACCAAGGATCTCCCCAAGGATTTCGATTGGCGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGGGCGTGTGGTTCGTGTTGGTCTTTCAGTACGACGGGAGCGTTGGAAGGAGCTCATTATCTGGCCACTGGTGAGCTCGTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGATCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACTCAGGCTGTAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTCAGTCTGGGGGAGTACAGAAAGAAAAGGACTATCCATACACCGGGAGAGATGGCACCTGCAAATTTGACAAAACCAAAGTTGCGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGAACAAATTGCTGCAAACCTAGTAAAGAATGGCCCTCTTGCAGACATATGTTGGTGGCGTCTCATGCCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTCTAGTTGGTTATGGTGA

>Glyma17g37400.2   sequence type=CDS   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGTCACTCCTTGCTCTTAGCCCTCCTCCTCTTCGCCGCCGTGGCCACCGCCGCGATGGCGGTGGCCGCGTCCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGATGTTGGCGAAGCCGAAGAGGAGGACAACCTGCTGAACGCCGAGCACCACTTCGCGAGCTTCAAGGCCAAGTTCGCCAAGACCTACGCCACCAAGGAGGAGCACGATCATCGCTTCGGCGTCTTCAAGTCCAACCTCCGCAGAGCCAGGCTGCACGCCAAGCTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTAACTCCGGCCGAGTTCCGCCGCCAGTTCCTCGGCCTCAAGCCGCTCCGCTTCCCGGCGCACGCCCAGAAGGCGCCCATCCTCCCCACCAAGGATCTCCCCAAGGATTTCGATTGGCGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGGGCGTGTGGTTCGTGTTGGTCTTTCAGTACGACGGGAGCGTTGGAAGGAGCTCATTATCTGGCCACTGGTGAGCTCGTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGATCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACTCAGGCTGTAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTCAGTCTGGGGGAGTACAGAAAGAAAAGGACTATCCATACACCGGGAGAGATGGCACCTGCAAATTTGACAAAACCAAAGTTGCGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGAACAAATTGCTGCAAACCTAGTAAAGAATGGCCCTCTTGCAGTTGCTATCAATGCAGTTTTTATGCAGACATATGTTGGTGGCGTCTCATGCCCATACATCTGTGGGAAGCATTTGGATCATGGGGTTCTTCTAGTTGGTTATGGTGAAGGTGCATATGCTCCCATTCGTTTTAAGAACAAACCTTACTGGATCATTAAGAATTCATGGGGCGAGAGCTGGGGAGAGAATGGATATTACAAGATCTGCAGAGGTCGAAATGTGTGTGGAGTAGATTCCATGGTCTCAACTGTAGCTGCTATATATCCATCCAGCCATTAA

>Glyma17g37400.3   sequence type=CDS   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCGTCACTCCTTGCTCTTAGCCCTCCTCCTCTTCGCCGCCGTGGCCACCGCCGCGATGGCGGTGGCCGCGTCCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGATGTTGGCGAAGCCGAAGAGGAGGACAACCTGCTGAACGCCGAGCACCACTTCGCGAGCTTCAAGGCCAAGTTCGCCAAGACCTACGCCACCAAGGAGGAGCACGATCATCGCTTCGGCGTCTTCAAGTCCAACCTCCGCAGAGCCAGGCTGCACGCCAAGCTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTAACTCCGGCCGAGTTCCGCCGCCAGTTCCTCGGCCTCAAGCCGCTCCGCTTCCCGGCGCACGCCCAGAAGGCGCCCATCCTCCCCACCAAGGATCTCCCCAAGGATTTCGATTGGCGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGGGCGTGTGGTTCGTGTTGGTCTTTCAGTACGACGGGAGCGTTGGAAGGAGCTCATTATCTGGCCACTGGTGAGCTCGTGAGCCTTAGCGAGCAACAGCTTGTGGATTGCGATCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACTCAGGCTGTAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTCAGTCTGGGGGAGTACAGAAAGAAAAGGACTATCCATACACCGGGAGAGATGGCACCTGCAAATTTGACAAAACCAAAGTTGCGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGAACAAATTGCTGCAAACCTAGTAAAGAATGGCCCTCTTGCAGGTAACTTAATTGTTCTCTGA

Predicted protein sequences of Glyma17g37400

Limit To All Plant Sequences

>Glyma17g37400.1   sequence type=predicted peptide   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARHSLLLALLLFAAVATAAMAVAASDADDILIRQVVPDVGEAEEEDNLLNAEHHFASFKAKFAKTYATKEEHDHRFGVFKSNLRRARLHAKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLRFPAHAQKAPILPTKDLPKDFDWRDKGAVTNVKDQGACGSCWSFSTTGALEGAHYLATGELVSLSEQQLVDCDHVCDPEEYGACDSGCNGGLMNNAFEYILQSGGVQKEKDYPYTGRDGTCKFDKTKVAATVSNYSVVSLDEEQIAANLVKNGPLADICWWRLMPIHLWEAFGSWGSSSWLW*

>Glyma17g37400.2   sequence type=predicted peptide   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARHSLLLALLLFAAVATAAMAVAASDADDILIRQVVPDVGEAEEEDNLLNAEHHFASFKAKFAKTYATKEEHDHRFGVFKSNLRRARLHAKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLRFPAHAQKAPILPTKDLPKDFDWRDKGAVTNVKDQGACGSCWSFSTTGALEGAHYLATGELVSLSEQQLVDCDHVCDPEEYGACDSGCNGGLMNNAFEYILQSGGVQKEKDYPYTGRDGTCKFDKTKVAATVSNYSVVSLDEEQIAANLVKNGPLAVAINAVFMQTYVGGVSCPYICGKHLDHGVLLVGYGEGAYAPIRFKNKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAIYPSSH*

>Glyma17g37400.3   sequence type=predicted peptide   gene model=Glyma17g37400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARHSLLLALLLFAAVATAAMAVAASDADDILIRQVVPDVGEAEEEDNLLNAEHHFASFKAKFAKTYATKEEHDHRFGVFKSNLRRARLHAKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLRFPAHAQKAPILPTKDLPKDFDWRDKGAVTNVKDQGACGSCWSFSTTGALEGAHYLATGELVSLSEQQLVDCDHVCDPEEYGACDSGCNGGLMNNAFEYILQSGGVQKEKDYPYTGRDGTCKFDKTKVAATVSNYSVVSLDEEQIAANLVKNGPLAGNLIVL*

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